Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G111500.1 | Wheat | nucleus | 97.0 | 96.64 |
| TraesCS1A01G107600.1 | Wheat | nucleus | 96.44 | 95.9 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 94.19 | 93.67 |
| Os05t0163400-03 | Rice | nucleus | 73.97 | 74.11 |
| EES19093 | Sorghum | nucleus | 64.04 | 63.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.74 | 46.43 |
| TraesCS3B01G120600.2 | Wheat | cytosol | 42.7 | 44.02 |
| VIT_16s0022g00290.t01 | Wine grape | nucleus | 5.81 | 40.79 |
| TraesCS5B01G313800.1 | Wheat | cytosol, nucleus, plastid | 7.87 | 24.56 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 14.61 | 22.74 |
| KRH32434 | Soybean | nucleus | 21.91 | 21.71 |
| TraesCS5B01G279200.1 | Wheat | cytosol | 4.87 | 21.31 |
| KRH19845 | Soybean | nucleus | 21.72 | 21.09 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 13.67 | 20.98 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 14.42 | 20.64 |
| PGSC0003DMT400004449 | Potato | nucleus | 20.79 | 20.48 |
| Solyc09g007530.2.1 | Tomato | nucleus | 20.79 | 20.48 |
| CDY55435 | Canola | nucleus | 20.04 | 20.27 |
| Bra023101.1-P | Field mustard | nucleus | 20.22 | 20.26 |
| KRG95955 | Soybean | nucleus | 20.79 | 20.22 |
| VIT_08s0040g02160.t01 | Wine grape | nucleus | 20.6 | 20.15 |
| KRH67668 | Soybean | nucleus | 20.6 | 19.96 |
| CDY68424 | Canola | nucleus | 20.04 | 19.93 |
| CDY46757 | Canola | nucleus | 19.85 | 19.89 |
| CDX79718 | Canola | nucleus | 19.66 | 19.77 |
| Bra017205.1-P | Field mustard | nucleus | 19.85 | 19.74 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 18.91 | 19.73 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 20.22 | 19.11 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 19.85 | 18.47 |
| TraesCS4B01G191300.1 | Wheat | nucleus | 8.8 | 17.94 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 17.6 | 17.8 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 19.66 | 17.53 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 8.24 | 17.39 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 17.23 | 16.79 |
| TraesCS7B01G170500.1 | Wheat | cytosol, mitochondrion, nucleus | 8.99 | 16.05 |
| TraesCS2B01G542200.2 | Wheat | nucleus | 19.29 | 15.37 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 16.29 | 15.05 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 14.98 | 14.18 |
| TraesCS2B01G030700.1 | Wheat | nucleus | 17.98 | 13.69 |
| Bra028576.1-P | Field mustard | cytosol | 7.12 | 13.43 |
| TraesCS5B01G325800.1 | Wheat | mitochondrion | 9.36 | 13.23 |
| Bra036336.1-P | Field mustard | nucleus | 8.43 | 8.95 |
| CDY47948 | Canola | nucleus | 8.43 | 8.95 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G129600.1 | EnsemblPlantsGene:TraesCS1B01G129600 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF45 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16481 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1B:-:159914472..159924180
Molecular Weight (calculated)
58230.6 Da
IEP (calculated)
7.700
GRAVY (calculated)
-0.759
Length
534 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGHHYHNSQ MSRMDRTNQP RNEPPPFGQK LFMHPRGDAP NGAGPSGYGV TTVRSNELPS SSYAGQSYGQ QIGAPGTLHS SHAGYPPAGS SSSSYAPYNT
101: QHVPSLSYPR RSEDSFIPGV HVDDRRVAPK RRNPITHPVD GVSAGAYYPG SSSNNQFSGY MPLNPVPTRE TCPPQISSNM GSGHWNDHQF VNHEGSQRNV
201: RGRHDHSSIH SEYNSSTACP SNSLHVPPYH PNANAPFGSA PVQRERAPLS LPPRIVPPGT DGSTGIAFRE RPFYPAPQST NISAPVPTLP GSSDGAPFAR
301: IGYTPRPVHH NAGHNYPPPA FTTSSNSGAV RCEPANPHYQ PAMPSYPPAT AAASSVQPLH AEASFRQPRH VSVGHGGSAR SRRMRDSYHC FHPLMIEENN
401: LGRSAAERSM MLDQLVIHES REALDPHWDM RLDIDDMSYE ELLALEERIG NVNTGLADEK ISGCVMELAC RSSARTQNDQ DKERCIICLE EYKHKDSLGK
501: LKCGHDFHAG CIKKWLEVKN ACPVCKADAA NEAT
101: QHVPSLSYPR RSEDSFIPGV HVDDRRVAPK RRNPITHPVD GVSAGAYYPG SSSNNQFSGY MPLNPVPTRE TCPPQISSNM GSGHWNDHQF VNHEGSQRNV
201: RGRHDHSSIH SEYNSSTACP SNSLHVPPYH PNANAPFGSA PVQRERAPLS LPPRIVPPGT DGSTGIAFRE RPFYPAPQST NISAPVPTLP GSSDGAPFAR
301: IGYTPRPVHH NAGHNYPPPA FTTSSNSGAV RCEPANPHYQ PAMPSYPPAT AAASSVQPLH AEASFRQPRH VSVGHGGSAR SRRMRDSYHC FHPLMIEENN
401: LGRSAAERSM MLDQLVIHES REALDPHWDM RLDIDDMSYE ELLALEERIG NVNTGLADEK ISGCVMELAC RSSARTQNDQ DKERCIICLE EYKHKDSLGK
501: LKCGHDFHAG CIKKWLEVKN ACPVCKADAA NEAT
001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
Arabidopsis Description
RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.