CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19845	Soybean	nucleus	92.58	90.73
KRG95955	Soybean	nucleus	74.4	73.04
KRH67668	Soybean	nucleus	72.54	70.96
VIT_08s0040g02160.t01	Wine grape	nucleus	61.22	60.44
GSMUA_AchrUn_...	Banana	nucleus	11.87	57.14
KRH05664	Soybean	nucleus	12.43	55.37
Solyc09g007530.2.1	Tomato	nucleus	50.28	50.0
PGSC0003DMT400004449	Potato	nucleus	49.54	49.26
GSMUA_Achr5P08460_001	Banana	nucleus	35.44	33.28
KRH53246	Soybean	nucleus	8.91	26.23
KRH64669	Soybean	nucleus	9.09	24.26
KRH24699	Soybean	nucleus	11.13	24.19
KRH30071	Soybean	cytosol	15.4	24.13
KRH55165	Soybean	nucleus	13.73	23.79
KRH29702	Soybean	nucleus	10.76	23.39
KRH22017	Soybean	nucleus	22.63	23.11
KRH27487	Soybean	cytosol, nucleus, plastid	10.58	23.08
KRH26195	Soybean	nucleus	19.3	22.71
KRH17980	Soybean	nucleus	8.53	22.66
EES00281	Sorghum	nucleus	21.52	22.52
KRH55161	Soybean	nucleus	19.11	22.49
TraesCS1D01G111500.1	Wheat	nucleus	22.26	22.39
HORVU1Hr1G024190.2	Barley	nucleus	22.08	22.16
Os01t0159300-01	Rice	nucleus	20.59	22.16
KRH55090	Soybean	nucleus	15.21	22.04
TraesCS1A01G107600.1	Wheat	nucleus	21.89	21.97
KRH16389	Soybean	nucleus	8.35	21.95
TraesCS1B01G129600.1	Wheat	nucleus	21.71	21.91
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	20.78	21.88
Zm00001d008649_P003	Maize	cytosol	21.15	21.63
KRH20832	Soybean	nucleus	9.83	21.46
Os05t0163400-03	Rice	nucleus	20.78	21.01
Zm00001d039769_P002	Maize	cytosol	21.15	20.69
EES19093	Sorghum	nucleus	20.59	20.63
KRH41763	Soybean	nucleus	14.29	20.42
KRH48568	Soybean	nucleus	13.36	20.34
KRH39137	Soybean	nucleus	13.91	20.33
TraesCS3A01G103000.1	Wheat	nucleus	19.3	20.04
TraesCS3B01G120600.2	Wheat	cytosol	19.11	19.88
TraesCS3D01G105300.1	Wheat	cytosol	18.92	19.69
KRH60461	Soybean	nucleus	14.47	18.1
HORVU3Hr1G018800.2	Barley	cytosol, plastid	19.48	17.83
KRG90628	Soybean	nucleus	10.95	17.61
KRH50319	Soybean	nucleus	23.01	17.34
KRH70661	Soybean	mitochondrion, nucleus	22.82	16.87
KRH61306	Soybean	nucleus	20.22	16.67
KRH52597	Soybean	nucleus	16.7	16.64
KRH52013	Soybean	nucleus	21.52	16.38
KRH04957	Soybean	nucleus	15.96	16.17
KRH16134	Soybean	nucleus	16.33	15.86
KRH36126	Soybean	cytosol, mitochondrion, nucleus	10.39	15.77
KRH61311	Soybean	nucleus	21.34	15.67
KRH04591	Soybean	nucleus	9.65	15.43
KRH04592	Soybean	nucleus	9.28	14.97
KRH61936	Soybean	nucleus	14.29	13.82
CDY47948	Canola	nucleus	11.69	12.52
Bra036336.1-P	Field mustard	nucleus	11.69	12.52
Bra028576.1-P	Field mustard	cytosol	5.94	11.31
KRH05663	Soybean	cytosol	11.32	10.5

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:547939	EMBL:ACUP02006116	EnsemblPlantsGene:GLYMA_10G051200	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7LHJ5	EnsemblPlants:KRH32434	ProteinID:KRH32434	ProteinID:KRH32434.1	ProteinID:KRH32435.1
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF47	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00023C8A73	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:4583526..4587374

Molecular Weight (calculated)

59882.2 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.783

Length

539 amino acids

Sequence
(BLAST)

001: MGHRHLYSSS PIFEGEPDQN WNHMHMDQQY VNHGRSTTSD NGSFIYPLEN MSIDSISFPS HWNTAPRSNG YASTSLNIEA PPHQTDVSGT SHDHFLPSSS
101: AGMFYAVPEN YVHQPSNSNY DRQAFSAADG GFIDLTMGNG RGPHKRKSPG IPPVCERGST SRYSNATNAA DRPTSSELQP EKPNMDSLYM PWDHVNMTPT
201: FRGRGLSIRG EGPLRNVRSR SALDLESNLA RTHLSNTHPH NSYSTGLPID HSNMVDLSTQ TSGTLTRDWS PMSICPPHGR VSSSDANAFN HEASHFLIGS
301: SSSNAPVDVG GFHNEFGTSR NPTAPQSFHN NLTQTARGVH SNYSQRSTPT FRASSSLRLG RVAPSDDGLH MVSESYSSRQ PRPLTTVGWQ NNNRNGRSRI
401: PSDRYRSLDD EGFMIVDRTS LYGPRNMLDR HRDMRMDIDN MSYEELLALG ERIGHVSTGL SEDLISKYLT ETIYCSSEQS QEEEACAICL EEYKNMDDVG
501: TLKACGHDYH VGCIRKWLSM KKVCPICKAS ALPEDKKGK

Best Arabidopsis Sequence Match ( AT2G37150.10 )
(BLAST)

001: MGHRHFLGSS QFFDDEHDQG WNHTHPEHPY SSQATSGTSE NRSHVYPAEN MLNEGMPVSS HWNSSPGPNA YTDSGHSVER PHYNPGVSGP SHDPSVNSTV
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.