CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95955	Soybean	nucleus	90.93	91.26
KRH19845	Soybean	nucleus	72.6	72.73
KRH32434	Soybean	nucleus	70.96	72.54
VIT_08s0040g02160.t01	Wine grape	nucleus	61.16	61.72
GSMUA_AchrUn_...	Banana	nucleus	11.07	54.46
KRH05664	Soybean	nucleus	11.25	51.24
Solyc09g007530.2.1	Tomato	nucleus	49.73	50.55
PGSC0003DMT400004449	Potato	nucleus	49.18	50.0
GSMUA_Achr5P08460_001	Banana	nucleus	33.76	32.4
KRH24699	Soybean	nucleus	11.98	26.61
KRH53246	Soybean	nucleus	8.71	26.23
KRH29702	Soybean	nucleus	11.62	25.81
KRH27487	Soybean	cytosol, nucleus, plastid	11.43	25.51
KRH20832	Soybean	nucleus	10.89	24.29
KRH30071	Soybean	cytosol	14.7	23.55
KRH64669	Soybean	nucleus	8.53	23.27
KRH17980	Soybean	nucleus	8.53	23.15
KRH55165	Soybean	nucleus	12.89	22.83
KRH22017	Soybean	nucleus	21.78	22.73
Os01t0159300-01	Rice	nucleus	20.51	22.55
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	20.87	22.46
KRH16389	Soybean	nucleus	8.35	22.44
KRH48568	Soybean	nucleus	14.34	22.32
KRH55161	Soybean	nucleus	18.51	22.27
KRH26195	Soybean	nucleus	18.51	22.27
KRH39137	Soybean	nucleus	14.7	21.95
EES00281	Sorghum	nucleus	20.33	21.75
Zm00001d008649_P003	Maize	cytosol	20.51	21.44
TraesCS1D01G111500.1	Wheat	nucleus	20.69	21.27
KRH55090	Soybean	nucleus	14.34	21.24
TraesCS1A01G107600.1	Wheat	nucleus	20.15	20.67
HORVU1Hr1G024190.2	Barley	nucleus	20.15	20.67
TraesCS1B01G129600.1	Wheat	nucleus	19.96	20.6
Zm00001d039769_P002	Maize	cytosol	20.51	20.51
Os05t0163400-03	Rice	nucleus	19.78	20.45
EES19093	Sorghum	nucleus	19.96	20.45
KRH41763	Soybean	nucleus	13.97	20.42
TraesCS3B01G120600.2	Wheat	cytosol	18.69	19.88
TraesCS3D01G105300.1	Wheat	cytosol	18.69	19.88
TraesCS3A01G103000.1	Wheat	nucleus	18.69	19.85
KRG90628	Soybean	nucleus	11.25	18.51
KRH04957	Soybean	nucleus	17.79	18.42
KRH60461	Soybean	nucleus	14.16	18.1
KRH61306	Soybean	nucleus	21.05	17.74
KRH16134	Soybean	nucleus	17.79	17.66
HORVU3Hr1G018800.2	Barley	cytosol, plastid	18.69	17.49
KRH52597	Soybean	nucleus	17.06	17.38
KRH52013	Soybean	nucleus	21.78	16.95
KRH50319	Soybean	nucleus	21.96	16.92
KRH70661	Soybean	mitochondrion, nucleus	22.32	16.87
KRH36126	Soybean	cytosol, mitochondrion, nucleus	10.71	16.62
KRH61311	Soybean	nucleus	21.96	16.48
KRH61936	Soybean	nucleus	14.16	14.0
KRH04592	Soybean	nucleus	8.17	13.47
KRH04591	Soybean	nucleus	8.17	13.35
Bra028576.1-P	Field mustard	cytosol	6.35	12.37
CDY47948	Canola	nucleus	10.89	11.93
Bra036336.1-P	Field mustard	nucleus	10.89	11.93
KRH05663	Soybean	cytosol	11.98	11.36

Protein Annotations

EMBL:ACUP02002069	EnsemblPlants:KRH67668	EnsemblPlantsGene:GLYMA_03G179300	EntrezGene:100780416	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF47	PFAM:PF13639
PFscan:PS50089	ProteinID:KRH67668	ProteinID:KRH67668.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0002339317	UniProt:I1JPK8	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:39156963..39160199

Molecular Weight (calculated)

60813.8 Da

IEP (calculated)

6.472

GRAVY (calculated)

-0.712

Length

551 amino acids

Sequence
(BLAST)

001: MGHRQFHNTS SLFEGEPDQN WNHMHTDQQC VHLGRTSTSE NGSFIYPAEN MSIDNMSFPS HWNSSTRSNG YASSSNNIDV PPHQSDASGT YNDHFVDLSS
101: AGPSLFIPLE NYAHQPSSSN YDRQTFHVDG GFIDLTMGSG QGHHKRKSPG IPSVYEGGST SRYFNAGSST DLPISSELWQ EKPNIDCQYI PWDHYCTMTP
201: TLRGTGLSIK GEGSLRNVRS RSTLDLDSNL ARTHSSSNHS HNSYPTVPPV DHSSTVDLSG QTSVTLTRDW SQMNISPANG RVLLSDTGAF GLETSHFLVG
301: SGATASNAAS VDVGGFHHEF GTSRNPTAPQ SFHNTQTQTA RGIRSNYSQR STPTFRASSS LRSGQVTSDD GLPMVAESYS SRLPRPLSTI GRRNGDRNGR
401: SRISSERYRS LAESGLHDRF SSEGFMVVER ASVYGSRNML DQHRDMRMDV DNMSYEELLA LGERIGYVNT GISEDSLNKC LTETIYCSSE QSQDEGNCVI
501: CLEEYKNMDD VGTLKTCGHD YHVSCIKKWL SLRKLCPICK VSALPEDTKD K

Best Arabidopsis Sequence Match ( AT2G37150.10 )
(BLAST)

001: MGHRHFLGSS QFFDDEHDQG WNHTHPEHPY SSQATSGTSE NRSHVYPAEN MLNEGMPVSS HWNSSPGPNA YTDSGHSVER PHYNPGVSGP SHDPSVNSTV
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.