Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42940.1 | KRH22137 | AT1G52890.1 | 12646039 |
| AT5G42940.1 | KRH27201 | AT1G52890.1 | 12646039 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH53246 | Soybean | nucleus | 35.54 | 23.5 |
| KRH64669 | Soybean | nucleus | 36.36 | 21.78 |
| KRH17980 | Soybean | nucleus | 32.23 | 19.21 |
| Bra027467.1-P | Field mustard | nucleus | 63.64 | 18.78 |
| CDY32973 | Canola | nucleus | 62.81 | 18.54 |
| KRH16389 | Soybean | nucleus | 31.41 | 18.54 |
| CDY43590 | Canola | nucleus | 64.46 | 18.53 |
| KRH24699 | Soybean | nucleus | 35.54 | 17.34 |
| KRH48568 | Soybean | nucleus | 49.59 | 16.95 |
| KRH29702 | Soybean | nucleus | 34.71 | 16.94 |
| KRH27487 | Soybean | cytosol, nucleus, plastid | 33.06 | 16.19 |
| KRH39137 | Soybean | nucleus | 47.93 | 15.72 |
| KRH30071 | Soybean | cytosol | 44.63 | 15.7 |
| KRH55165 | Soybean | nucleus | 39.67 | 15.43 |
| KRH20832 | Soybean | nucleus | 31.41 | 15.38 |
| CDY17114 | Canola | nucleus | 64.46 | 14.69 |
| KRH41763 | Soybean | nucleus | 45.45 | 14.59 |
| KRH61306 | Soybean | nucleus | 77.69 | 14.37 |
| KRH52013 | Soybean | nucleus | 79.34 | 13.56 |
| KRH55090 | Soybean | nucleus | 41.32 | 13.44 |
| KRH60461 | Soybean | nucleus | 47.11 | 13.23 |
| CDY17061 | Canola | nucleus | 65.29 | 13.04 |
| CDY43220 | Canola | nucleus | 65.29 | 12.97 |
| KRH61311 | Soybean | nucleus | 78.51 | 12.94 |
| CDY22376 | Canola | nucleus | 65.29 | 12.85 |
| Bra033652.1-P | Field mustard | nucleus | 65.29 | 12.85 |
| KRH26195 | Soybean | nucleus | 47.11 | 12.45 |
| KRH32434 | Soybean | nucleus | 55.37 | 12.43 |
| AT1G45180.3 | Thale cress | nucleus | 66.12 | 12.4 |
| CDX71531 | Canola | nucleus | 65.29 | 12.4 |
| Solyc12g088740.1.1 | Tomato | nucleus | 70.25 | 12.27 |
| KRH55161 | Soybean | nucleus | 46.28 | 12.23 |
| Solyc04g078680.2.1 | Tomato | nucleus | 72.73 | 12.19 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 73.55 | 12.13 |
| PGSC0003DMT400039849 | Potato | nucleus | 69.42 | 12.12 |
| KRH19845 | Soybean | nucleus | 54.55 | 12.0 |
| KRG95955 | Soybean | nucleus | 52.89 | 11.66 |
| KRG90628 | Soybean | nucleus | 32.23 | 11.64 |
| KRH04591 | Soybean | nucleus | 32.23 | 11.57 |
| AT5G42940.1 | Thale cress | nucleus | 65.29 | 11.43 |
| KRH04592 | Soybean | nucleus | 31.41 | 11.38 |
| KRH50319 | Soybean | nucleus | 66.94 | 11.33 |
| KRH04957 | Soybean | nucleus | 49.59 | 11.28 |
| KRH52597 | Soybean | nucleus | 50.41 | 11.28 |
| KRH67668 | Soybean | nucleus | 51.24 | 11.25 |
| KRH70661 | Soybean | mitochondrion, nucleus | 65.29 | 10.84 |
| KRH16134 | Soybean | nucleus | 49.59 | 10.81 |
| KRH36126 | Soybean | cytosol, mitochondrion, nucleus | 31.41 | 10.7 |
| KRH22017 | Soybean | nucleus | 45.45 | 10.42 |
| Bra014043.1-P | Field mustard | nucleus | 49.59 | 10.42 |
| PGSC0003DMT400020528 | Potato | nucleus | 52.07 | 9.14 |
| KRH61936 | Soybean | nucleus | 38.84 | 8.44 |
| KRH05663 | Soybean | cytosol | 4.13 | 0.86 |
Protein Annotations
| EntrezGene:100791026 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02010766 | EnsemblPlantsGene:GLYMA_17G240900 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR013083 | UniProt:K7MNP1 | EnsemblPlants:KRH05664 | ProteinID:KRH05664 | ProteinID:KRH05664.1 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000295489B |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:+:39634396..39635734
Molecular Weight (calculated)
13742.3 Da
IEP (calculated)
4.696
GRAVY (calculated)
-0.564
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MILDPSVFSG IADIHDRHRD MRLDVDNMSY EELLALEERI GNVSTGLSEE IVSKLLKKKK YSAEPDSQHE AEPCCVCQEE YKDGDDLGSL DCGHDYHRDC
101: IKQWLMHKNL CPICKTTGLA T
101: IKQWLMHKNL CPICKTTGLA T
001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.