Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42940.1 | CDY26031 | AT1G52890.1 | 12646039 |
| AT5G42940.1 | CDY26032 | AT1G52890.1 | 12646039 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32973 | Canola | nucleus | 93.35 | 95.85 |
| KRH05664 | Soybean | nucleus | 18.53 | 64.46 |
| CDY22376 | Canola | nucleus | 76.01 | 52.03 |
| CDX71531 | Canola | nucleus | 78.38 | 51.81 |
| AT5G42940.1 | Thale cress | nucleus | 77.43 | 47.18 |
| CDY17114 | Canola | nucleus | 51.78 | 41.05 |
| CDY43220 | Canola | nucleus | 55.82 | 38.59 |
| CDY17061 | Canola | nucleus | 54.87 | 38.12 |
| CDY47948 | Canola | nucleus | 32.78 | 27.44 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 45.37 | 26.02 |
| Solyc04g078680.2.1 | Tomato | nucleus | 43.23 | 25.21 |
| CDY13429 | Canola | cytosol | 14.96 | 24.42 |
| Solyc12g088740.1.1 | Tomato | nucleus | 39.91 | 24.24 |
| KRH52013 | Soybean | nucleus | 40.38 | 24.01 |
| KRH61306 | Soybean | nucleus | 37.29 | 24.01 |
| PGSC0003DMT400039849 | Potato | nucleus | 39.43 | 23.95 |
| CDY37230 | Canola | nucleus | 32.3 | 23.09 |
| CDY62314 | Canola | nucleus | 32.3 | 22.97 |
| KRH61311 | Soybean | nucleus | 39.91 | 22.89 |
| PGSC0003DMT400020528 | Potato | nucleus | 36.82 | 22.5 |
| CDX77848 | Canola | nucleus | 11.16 | 22.17 |
| CDY67192 | Canola | nucleus | 11.16 | 22.07 |
| CDX97032 | Canola | plastid | 16.86 | 21.19 |
| CDY71882 | Canola | plastid | 16.86 | 20.29 |
| CDY40109 | Canola | nucleus | 8.79 | 19.89 |
| CDX93901 | Canola | nucleus | 11.16 | 19.58 |
| CDY53710 | Canola | nucleus | 11.16 | 19.42 |
| CDX85750 | Canola | nucleus | 17.58 | 19.17 |
| CDX68213 | Canola | nucleus, plastid | 15.68 | 18.91 |
| CDY11092 | Canola | cytosol, plastid | 15.2 | 18.39 |
| CDX83878 | Canola | nucleus | 15.44 | 18.21 |
| CDY60141 | Canola | plastid | 15.44 | 18.21 |
| CDX91624 | Canola | nucleus | 9.5 | 18.18 |
| CDX73013 | Canola | plastid | 15.2 | 18.03 |
| CDY27083 | Canola | nucleus | 9.26 | 17.81 |
| CDY24110 | Canola | nucleus | 19.24 | 17.61 |
| CDX96741 | Canola | nucleus | 15.2 | 17.58 |
| CDY26006 | Canola | nucleus | 19.24 | 17.53 |
| CDY25871 | Canola | nucleus | 19.71 | 17.36 |
| CDY68658 | Canola | nucleus | 19.0 | 17.06 |
| CDX88140 | Canola | nucleus | 19.24 | 16.8 |
| CDY55839 | Canola | nucleus | 19.48 | 16.77 |
| CDX91625 | Canola | cytosol | 9.03 | 16.59 |
| CDX82450 | Canola | nucleus | 17.1 | 16.07 |
| CDX75805 | Canola | cytosol | 16.86 | 16.03 |
| CDX79718 | Canola | nucleus | 20.19 | 16.01 |
| CDY46757 | Canola | nucleus | 20.19 | 15.95 |
| CDY31919 | Canola | nucleus | 10.21 | 15.75 |
| CDY55435 | Canola | nucleus | 19.71 | 15.72 |
| CDX95473 | Canola | nucleus | 17.1 | 15.52 |
| CDY68424 | Canola | nucleus | 19.71 | 15.46 |
| CDX97629 | Canola | nucleus | 16.15 | 15.42 |
| CDY00512 | Canola | nucleus | 9.98 | 15.38 |
| CDY27082 | Canola | cytosol | 8.55 | 15.13 |
| CDX70363 | Canola | nucleus | 17.34 | 15.02 |
| CDX78393 | Canola | nucleus | 17.58 | 14.98 |
| CDY68521 | Canola | nucleus | 15.68 | 14.97 |
| CDY63645 | Canola | nucleus | 16.15 | 14.72 |
| CDY24595 | Canola | nucleus | 10.93 | 14.6 |
| CDY13433 | Canola | nucleus | 16.15 | 14.59 |
| CDY33429 | Canola | nucleus | 11.4 | 14.55 |
| CDY25357 | Canola | nucleus | 10.93 | 14.38 |
| CDX97044 | Canola | nucleus | 17.34 | 14.31 |
| CDY42218 | Canola | nucleus | 11.16 | 14.07 |
| CDX69813 | Canola | mitochondrion | 17.58 | 13.88 |
| CDY69560 | Canola | nucleus | 12.35 | 10.22 |
| CDY36635 | Canola | nucleus | 12.11 | 8.56 |
Protein Annotations
| EnsemblPlants:CDY43590 | EnsemblPlantsGene:GSBRNA2T00076896001 | Gene3D:3.30.40.10 | GO:A0A078HYJ0 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY43590 | ProteinID:CDY43590.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EEBCBA |
| UniProt:A0A078HYJ0 | MapMan:35.1 | : | : | : | : |
Description
BnaC09g17290DBnaC09g17290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYJ0]
Coordinates
chrLK032562:-:14975..17126
Molecular Weight (calculated)
46538.1 Da
IEP (calculated)
5.397
GRAVY (calculated)
-0.690
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEERAILGF LSEALNFELG SCTSIDAVTD HWDHIHSLGD NDLHDYMIAN PEPSHEEQHD LHSSSGTKNE AASSHSEQRR NEIIDLDADS EQQPSAPNQH
101: VQNSNSPALS IPPVSRNMLP PFQWTEVSLA AGSSTSTVPP VERNLHLDET RPRSIPESPL FIPAPELRNA TSGDLNVASA VSTTGSATGV QPPSYQNLPH
201: QQRRRSELAR RSLISSLAGS DDHPTLHASP DGLVLQPGGD RQGDSVAGAH HSFRALAAAS RGRSSRLTVS QMQNILDVMR RDPNHNLRLE DVMFLNQSLL
301: FDGAAGMHDR YRDMRLDVDN MSYEELLALE ERIGDVCTGV NEETISNRLK QRKFKSSTKS PQDAEPCCIC QEEYSEGEDM GTLECGHDFH SQCIKEWLKQ
401: KNLCPICKTT GLNTAKRRKI G
101: VQNSNSPALS IPPVSRNMLP PFQWTEVSLA AGSSTSTVPP VERNLHLDET RPRSIPESPL FIPAPELRNA TSGDLNVASA VSTTGSATGV QPPSYQNLPH
201: QQRRRSELAR RSLISSLAGS DDHPTLHASP DGLVLQPGGD RQGDSVAGAH HSFRALAAAS RGRSSRLTVS QMQNILDVMR RDPNHNLRLE DVMFLNQSLL
301: FDGAAGMHDR YRDMRLDVDN MSYEELLALE ERIGDVCTGV NEETISNRLK QRKFKSSTKS PQDAEPCCIC QEEYSEGEDM GTLECGHDFH SQCIKEWLKQ
401: KNLCPICKTT GLNTAKRRKI G
001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
Arabidopsis Description
RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.