Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68424 | Canola | nucleus | 96.4 | 94.79 |
| Bra017205.1-P | Field mustard | nucleus | 95.64 | 94.04 |
| CDX79718 | Canola | nucleus | 79.17 | 78.72 |
| CDY46757 | Canola | nucleus | 77.65 | 76.92 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 77.27 | 68.11 |
| VIT_16s0022g00290.t01 | Wine grape | nucleus | 7.77 | 53.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.28 | 43.75 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 37.31 | 34.87 |
| CDY13429 | Canola | cytosol | 13.83 | 28.29 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 28.03 | 25.78 |
| CDX77848 | Canola | nucleus | 9.47 | 23.58 |
| CDY67192 | Canola | nucleus | 9.28 | 23.0 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 21.78 | 22.46 |
| CDX97032 | Canola | plastid | 13.64 | 21.49 |
| CDY53710 | Canola | nucleus | 9.85 | 21.49 |
| CDY63645 | Canola | nucleus | 18.75 | 21.43 |
| CDY71882 | Canola | plastid | 14.02 | 21.14 |
| CDY13433 | Canola | nucleus | 18.56 | 21.03 |
| CDX93901 | Canola | nucleus | 9.47 | 20.83 |
| Os01t0159300-01 | Rice | nucleus | 19.7 | 20.76 |
| CDY32973 | Canola | nucleus | 16.1 | 20.73 |
| CDY11092 | Canola | cytosol, plastid | 13.64 | 20.69 |
| CDX68213 | Canola | nucleus, plastid | 13.45 | 20.34 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 20.64 | 20.3 |
| CDY24110 | Canola | nucleus | 17.61 | 20.22 |
| CDY26006 | Canola | nucleus | 17.61 | 20.13 |
| Zm00001d008649_P003 | Maize | cytosol | 20.08 | 20.11 |
| Os05t0163400-03 | Rice | nucleus | 20.27 | 20.07 |
| TraesCS1B01G129600.1 | Wheat | nucleus | 20.27 | 20.04 |
| EES00281 | Sorghum | nucleus | 19.51 | 20.0 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 20.27 | 19.96 |
| TraesCS1A01G107600.1 | Wheat | nucleus | 20.27 | 19.93 |
| CDY43590 | Canola | nucleus | 15.72 | 19.71 |
| CDY25871 | Canola | nucleus | 17.8 | 19.67 |
| Zm00001d039769_P002 | Maize | cytosol | 20.45 | 19.6 |
| CDY55839 | Canola | nucleus | 17.8 | 19.22 |
| CDX91624 | Canola | nucleus | 7.95 | 19.09 |
| CDX73013 | Canola | plastid | 12.69 | 18.87 |
| CDX97629 | Canola | nucleus | 15.53 | 18.59 |
| EES19093 | Sorghum | nucleus | 18.94 | 18.59 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 18.18 | 18.53 |
| TraesCS3B01G120600.2 | Wheat | cytosol | 18.18 | 18.53 |
| CDY60141 | Canola | plastid | 12.5 | 18.49 |
| CDX85750 | Canola | nucleus | 13.45 | 18.39 |
| CDY27083 | Canola | nucleus | 7.58 | 18.26 |
| CDX82450 | Canola | nucleus | 15.34 | 18.08 |
| TraesCS3A01G103000.1 | Wheat | nucleus | 17.61 | 17.92 |
| CDY68521 | Canola | nucleus | 14.96 | 17.91 |
| CDY17114 | Canola | nucleus | 17.99 | 17.89 |
| CDX75805 | Canola | cytosol | 14.96 | 17.83 |
| CDX83878 | Canola | nucleus | 11.74 | 17.37 |
| CDY68658 | Canola | nucleus | 15.34 | 17.27 |
| CDX96741 | Canola | nucleus | 11.74 | 17.03 |
| CDY17061 | Canola | nucleus | 19.32 | 16.83 |
| CDX88140 | Canola | nucleus | 15.34 | 16.8 |
| CDX95473 | Canola | nucleus | 14.58 | 16.59 |
| CDY43220 | Canola | nucleus | 19.13 | 16.58 |
| CDX97044 | Canola | nucleus | 15.34 | 15.88 |
| CDY24595 | Canola | nucleus | 9.47 | 15.87 |
| CDY62314 | Canola | nucleus | 17.61 | 15.71 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 17.42 | 15.62 |
| CDY22376 | Canola | nucleus | 18.18 | 15.61 |
| CDY40109 | Canola | nucleus | 5.49 | 15.59 |
| CDX78393 | Canola | nucleus | 14.58 | 15.59 |
| CDY37230 | Canola | nucleus | 17.23 | 15.45 |
| CDY25357 | Canola | nucleus | 9.28 | 15.31 |
| CDY42218 | Canola | nucleus | 9.66 | 15.27 |
| CDX69813 | Canola | mitochondrion | 15.34 | 15.2 |
| CDY33429 | Canola | nucleus | 9.47 | 15.15 |
| CDX70363 | Canola | nucleus | 13.83 | 15.02 |
| CDY00512 | Canola | nucleus | 7.77 | 15.02 |
| CDX71531 | Canola | nucleus | 17.99 | 14.91 |
| CDY31919 | Canola | nucleus | 7.58 | 14.65 |
| CDX91625 | Canola | cytosol | 5.87 | 13.54 |
| CDY27082 | Canola | cytosol | 6.06 | 13.45 |
| CDY47948 | Canola | nucleus | 8.9 | 9.34 |
| CDY69560 | Canola | nucleus | 7.95 | 8.25 |
| CDY36635 | Canola | nucleus | 7.2 | 6.38 |
Protein Annotations
| EnsemblPlants:CDY55435 | EnsemblPlantsGene:GSBRNA2T00016833001 | Gene3D:3.30.40.10 | GO:A0A078J0T9 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF47 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY55435 | ProteinID:CDY55435.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE19B8 |
| UniProt:A0A078J0T9 | MapMan:35.2 | : | : | : | : |
Description
BnaA04g29200DBnaA04g29200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0T9]
Coordinates
chrLK033402:-:20435..22949
Molecular Weight (calculated)
59487.1 Da
IEP (calculated)
6.918
GRAVY (calculated)
-0.903
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHRHFPGSF QFFDDEQDQG WNHMHPEHPY TSLARTGISE SRSHVNPAGN MLNEGMPFSS HWNSSTGPNA YTASGHGVER PHYNPGTSGP SHVPFMSSAA
101: ATFSAPHEHY VTSASSSYCN SQTWSLDSYV DLHMENVRGA QKRKTPCDSS VYEMGSSSHY HGCRTSSDIP FSSELDMGKS SNRDHDPHYM PWLMNPSYIS
201: NNLSIRGERS SRNVRSRPTL DLETSVDLDS HPTHHNVEHS SSGQFPGQTS HRNKDWNWNF PRHSPVPRDL NGLSPETNNF LPTRSVVNST SVDTSWYHQG
301: LIGNRNSSVS HGFPGTSTQS ATSSRFSHRS TPTYRSSSNG MRLEHSAYSS GDRSPFVTET YPSRHLRPPP HISWRSSDRP GRRRSSYERF QPPFDEVALH
401: EPFSSQGFMA VDHQQHYGSR NMHDHHRDLR LDIDDMTYED LLDLVERIGS VNTGLSKGAI STCLLETIFY PLYQTDEERK CAICLEEYKE GEELGELKGC
501: GHDYHGGCIK KWLSLKNSCP ICKSPAFT
101: ATFSAPHEHY VTSASSSYCN SQTWSLDSYV DLHMENVRGA QKRKTPCDSS VYEMGSSSHY HGCRTSSDIP FSSELDMGKS SNRDHDPHYM PWLMNPSYIS
201: NNLSIRGERS SRNVRSRPTL DLETSVDLDS HPTHHNVEHS SSGQFPGQTS HRNKDWNWNF PRHSPVPRDL NGLSPETNNF LPTRSVVNST SVDTSWYHQG
301: LIGNRNSSVS HGFPGTSTQS ATSSRFSHRS TPTYRSSSNG MRLEHSAYSS GDRSPFVTET YPSRHLRPPP HISWRSSDRP GRRRSSYERF QPPFDEVALH
401: EPFSSQGFMA VDHQQHYGSR NMHDHHRDLR LDIDDMTYED LLDLVERIGS VNTGLSKGAI STCLLETIFY PLYQTDEERK CAICLEEYKE GEELGELKGC
501: GHDYHGGCIK KWLSLKNSCP ICKSPAFT
001: MGHRHFLGSS QFFDDEHDQG WNHTHPEHPY SSQATSGTSE NRSHVYPAEN MLNEGMPVSS HWNSSPGPNA YTDSGHSVER PHYNPGVSGP SHDPSVNSTV
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.