Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36635 | Canola | nucleus | 87.62 | 74.83 |
| CDY62314 | Canola | nucleus | 61.69 | 53.04 |
| CDY37230 | Canola | nucleus | 61.3 | 52.97 |
| KRH05663 | Soybean | cytosol | 21.41 | 18.76 |
| CDY47948 | Canola | nucleus | 17.09 | 17.3 |
| CDY22376 | Canola | nucleus | 20.43 | 16.91 |
| CDX71531 | Canola | nucleus | 20.43 | 16.33 |
| CDY17114 | Canola | nucleus | 15.91 | 15.25 |
| CDY17061 | Canola | nucleus | 17.09 | 14.36 |
| CDY43220 | Canola | nucleus | 16.9 | 14.12 |
| CDY43590 | Canola | nucleus | 10.22 | 12.35 |
| CDY32973 | Canola | nucleus | 9.82 | 12.2 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 8.25 | 9.07 |
| CDX68213 | Canola | nucleus, plastid | 6.09 | 8.88 |
| CDY68424 | Canola | nucleus | 8.45 | 8.01 |
| CDY55435 | Canola | nucleus | 8.25 | 7.95 |
| CDY68658 | Canola | nucleus | 7.27 | 7.89 |
| CDX88140 | Canola | nucleus | 7.47 | 7.88 |
| CDY46757 | Canola | nucleus | 8.25 | 7.88 |
| CDY25871 | Canola | nucleus | 7.27 | 7.74 |
| CDY26006 | Canola | nucleus | 6.88 | 7.58 |
| CDY11092 | Canola | cytosol, plastid | 5.11 | 7.47 |
| CDY55839 | Canola | nucleus | 7.07 | 7.36 |
| CDX79718 | Canola | nucleus | 7.66 | 7.34 |
| CDX73013 | Canola | plastid | 5.11 | 7.32 |
| CDX78393 | Canola | nucleus | 7.07 | 7.29 |
| CDX82450 | Canola | nucleus | 6.29 | 7.14 |
| CDY60141 | Canola | plastid | 4.91 | 7.0 |
| CDX97629 | Canola | nucleus | 5.89 | 6.8 |
| CDX70363 | Canola | nucleus | 6.48 | 6.79 |
| CDX75805 | Canola | cytosol | 5.89 | 6.77 |
| CDY24110 | Canola | nucleus | 5.7 | 6.3 |
| CDY71882 | Canola | plastid | 4.32 | 6.29 |
| CDX97044 | Canola | nucleus | 6.29 | 6.27 |
| CDX69813 | Canola | mitochondrion | 6.48 | 6.19 |
| CDY68521 | Canola | nucleus | 5.3 | 6.12 |
| CDX95473 | Canola | nucleus | 5.5 | 6.03 |
| CDY24595 | Canola | nucleus | 3.73 | 6.03 |
| CDY25357 | Canola | nucleus | 3.73 | 5.94 |
| CDX85750 | Canola | nucleus | 4.32 | 5.7 |
| CDX97032 | Canola | plastid | 3.73 | 5.67 |
| CDY33429 | Canola | nucleus | 3.54 | 5.45 |
| CDY42218 | Canola | nucleus | 3.54 | 5.39 |
| CDX83878 | Canola | nucleus | 3.73 | 5.32 |
| Zm00001d015323_P002 | Maize | cytosol | 1.18 | 5.31 |
| CDX96741 | Canola | nucleus | 3.73 | 5.22 |
| CDX77848 | Canola | nucleus | 1.96 | 4.72 |
| CDX91624 | Canola | nucleus | 1.96 | 4.55 |
| CDY40109 | Canola | nucleus | 1.57 | 4.3 |
| CDY67192 | Canola | nucleus | 1.77 | 4.23 |
| CDY27083 | Canola | nucleus | 1.77 | 4.11 |
| CDY13433 | Canola | nucleus | 3.73 | 4.08 |
| CDY00512 | Canola | nucleus | 2.16 | 4.03 |
| CDY31919 | Canola | nucleus | 2.16 | 4.03 |
| CDY63645 | Canola | nucleus | 3.34 | 3.68 |
| CDX93901 | Canola | nucleus | 1.57 | 3.33 |
| CDY53710 | Canola | nucleus | 1.57 | 3.31 |
| CDY13429 | Canola | cytosol | 1.57 | 3.1 |
| CDX91625 | Canola | cytosol | 1.18 | 2.62 |
| CDY27082 | Canola | cytosol | 0.98 | 2.1 |
Protein Annotations
| EnsemblPlants:CDY69560 | EnsemblPlantsGene:GSBRNA2T00088854001 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF101 | ProteinID:CDY69560 | ProteinID:CDY69560.1 |
| SEG:seg | UniParc:UPI0004EEA438 | UniProt:A0A078JT12 | MapMan:35.1 | : | : |
Description
BnaCnng64180DBnaCnng64180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JT12]
Coordinates
chrLK039712:-:227..2726
Molecular Weight (calculated)
54551.4 Da
IEP (calculated)
7.399
GRAVY (calculated)
-0.768
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPMQGPRNS DVNQGDNEPV YNTEMNPLVD NEFSNSGTPS GRPTYASSTS QNHNWWRFGE SSSASGMETN HQLPQDGYAG GYMRDGPSFL RGSGANAMPQ
101: HVNMSMDMDS DGYGAQTSGV VFRHSNYGSS LGSSVQAAGE SSSGPASSLG LWGSSCKRKA LEGVPSSSFS GETPDFVSQN ENAGHPRYGA STPSQTSPNV
201: TSNHFGRTEP MFGGARSVAS TNAFHSVRNT DISSRPGRRL NPRQPQESVA FSISLGGTSV RPTGSLQQNI LLNAPSSVDP LDVRSTAFAS GSSSGEHPTN
301: IVHHPALTRN IHQFSWDRGS GSSGVEMPQW ETPRSNPEQP TMFAPPTDIR NPVHDQSMWS FTRGSPVDSP FASRGGPSSA IHGQQQPSNP AWIPPQSGPI
401: HNPTRASELS PWSLFPSIES QSASHGPLLP TGPSLSSNEA AMPSSSNSRS HRSRQRRSGL LSERQNELLH LRHLGRSLAA DSDGRNHLIS EIRQVLSAMR
501: RGESLRIEV
101: HVNMSMDMDS DGYGAQTSGV VFRHSNYGSS LGSSVQAAGE SSSGPASSLG LWGSSCKRKA LEGVPSSSFS GETPDFVSQN ENAGHPRYGA STPSQTSPNV
201: TSNHFGRTEP MFGGARSVAS TNAFHSVRNT DISSRPGRRL NPRQPQESVA FSISLGGTSV RPTGSLQQNI LLNAPSSVDP LDVRSTAFAS GSSSGEHPTN
301: IVHHPALTRN IHQFSWDRGS GSSGVEMPQW ETPRSNPEQP TMFAPPTDIR NPVHDQSMWS FTRGSPVDSP FASRGGPSSA IHGQQQPSNP AWIPPQSGPI
401: HNPTRASELS PWSLFPSIES QSASHGPLLP TGPSLSSNEA AMPSSSNSRS HRSRQRRSGL LSERQNELLH LRHLGRSLAA DSDGRNHLIS EIRQVLSAMR
501: RGESLRIEV
001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPIFRFNK
701: ERRLCLFIMR MIKMIVPKPL GTSDKIGTIQ RRLAWLLRKD DTYKSEKCYK KFSIQNFQID FSELIVLLNN INFGSHSMNL
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPIFRFNK
701: ERRLCLFIMR MIKMIVPKPL GTSDKIGTIQ RRLAWLLRKD DTYKSEKCYK KFSIQNFQID FSELIVLLNN INFGSHSMNL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.