Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00512 | Canola | nucleus | 96.7 | 96.7 |
| Bra028293.1-P | Field mustard | nucleus | 81.69 | 93.31 |
| AT5G52140.1 | Thale cress | nucleus | 61.17 | 59.64 |
| CDX91624 | Canola | nucleus | 33.7 | 41.82 |
| CDY27083 | Canola | nucleus | 33.33 | 41.55 |
| CDX91625 | Canola | cytosol | 33.33 | 39.74 |
| CDY27082 | Canola | cytosol | 32.23 | 36.97 |
| Solyc03g026150.2.1 | Tomato | nucleus | 23.44 | 27.0 |
| PGSC0003DMT400037132 | Potato | nucleus | 22.71 | 25.94 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 23.44 | 25.3 |
| CDY53710 | Canola | nucleus | 22.34 | 25.21 |
| CDX93901 | Canola | nucleus | 21.98 | 25.0 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 23.44 | 24.9 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 23.08 | 24.9 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 19.78 | 24.66 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 23.81 | 24.53 |
| Os04t0571200-01 | Rice | nucleus | 22.71 | 24.41 |
| EES11283 | Sorghum | nucleus | 20.88 | 23.08 |
| CDX77848 | Canola | nucleus | 15.75 | 20.28 |
| CDY24595 | Canola | nucleus | 23.08 | 20.0 |
| CDY25357 | Canola | nucleus | 23.08 | 19.69 |
| CDY67192 | Canola | nucleus | 15.02 | 19.25 |
| CDY42218 | Canola | nucleus | 23.44 | 19.16 |
| CDY33429 | Canola | nucleus | 22.71 | 18.79 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 22.71 | 18.29 |
| Zm00001d002624_P003 | Maize | cytosol | 20.51 | 16.67 |
| CDY13429 | Canola | cytosol | 14.29 | 15.12 |
| CDX97032 | Canola | plastid | 16.48 | 13.43 |
| CDX68213 | Canola | nucleus, plastid | 16.48 | 12.89 |
| CDY71882 | Canola | plastid | 16.48 | 12.86 |
| CDX73013 | Canola | plastid | 16.48 | 12.68 |
| CDY60141 | Canola | plastid | 16.48 | 12.61 |
| CDX85750 | Canola | nucleus | 17.58 | 12.44 |
| CDY11092 | Canola | cytosol, plastid | 15.75 | 12.36 |
| CDY40109 | Canola | nucleus | 8.06 | 11.83 |
| CDX96741 | Canola | nucleus | 14.65 | 10.99 |
| CDX82450 | Canola | nucleus | 17.58 | 10.71 |
| CDX97629 | Canola | nucleus | 17.22 | 10.66 |
| CDX83878 | Canola | nucleus | 13.92 | 10.64 |
| CDX75805 | Canola | cytosol | 17.22 | 10.61 |
| CDY32973 | Canola | nucleus | 15.75 | 10.49 |
| CDY43590 | Canola | nucleus | 15.75 | 10.21 |
| CDY68521 | Canola | nucleus | 16.48 | 10.2 |
| CDY68658 | Canola | nucleus | 17.22 | 10.02 |
| CDX70363 | Canola | nucleus | 17.58 | 9.88 |
| CDX88140 | Canola | nucleus | 17.22 | 9.75 |
| CDX78393 | Canola | nucleus | 17.58 | 9.72 |
| CDX95473 | Canola | nucleus | 16.48 | 9.7 |
| CDY25871 | Canola | nucleus | 16.85 | 9.62 |
| CDY24110 | Canola | nucleus | 16.12 | 9.57 |
| CDY63645 | Canola | nucleus | 16.12 | 9.52 |
| CDY26006 | Canola | nucleus | 16.12 | 9.52 |
| CDX97044 | Canola | nucleus | 17.58 | 9.41 |
| CDY55839 | Canola | nucleus | 16.85 | 9.41 |
| CDY13433 | Canola | nucleus | 15.75 | 9.23 |
| CDX69813 | Canola | mitochondrion | 17.22 | 8.82 |
| CDY46757 | Canola | nucleus | 16.48 | 8.44 |
| CDX79718 | Canola | nucleus | 16.12 | 8.29 |
| CDY17114 | Canola | nucleus | 15.02 | 7.72 |
| CDY37230 | Canola | nucleus | 16.48 | 7.64 |
| CDY55435 | Canola | nucleus | 14.65 | 7.58 |
| CDY22376 | Canola | nucleus | 16.85 | 7.48 |
| CDY68424 | Canola | nucleus | 14.65 | 7.45 |
| CDY62314 | Canola | nucleus | 16.12 | 7.43 |
| CDX71531 | Canola | nucleus | 17.22 | 7.38 |
| CDY17061 | Canola | nucleus | 16.12 | 7.26 |
| CDY43220 | Canola | nucleus | 15.75 | 7.06 |
| CDY47948 | Canola | nucleus | 4.76 | 2.58 |
| CDY69560 | Canola | nucleus | 4.03 | 2.16 |
| CDY36635 | Canola | nucleus | 4.03 | 1.85 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078H3D1 | UniProt:A0A078H3D1 | InterPro:BB | EnsemblPlants:CDY31919 |
| ProteinID:CDY31919 | ProteinID:CDY31919.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0040007 | GO:GO:0046621 | EnsemblPlantsGene:GSBRNA2T00050683001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF75 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EF36E6 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
BnaC09g28250DBnaC09g28250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3D1]
Coordinates
chrLK032282:+:311439..313826
Molecular Weight (calculated)
31060.8 Da
IEP (calculated)
4.423
GRAVY (calculated)
-0.780
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRLVNQSSI DENLAMFLQF GLSEDSDLTV NDDVIAREIQ QQYPNNSDLT ANDDVIAREI QQQYQNNWTY DDTAIALEIQ KQEGNLPTSL SDDEKLARYL
101: QQQDESANST DEDIHGNNSY IPERDAPSTS RTIIQHDDDD HFSGHHTHTS TRSNSSSISS LDLSTNENTD PANMTYEELN ELEDSMGNVD RGLSQRRILK
201: LPTYKYGAET KTCCWQIKKK KFIATDTQCS ICLVDYVMGD KITTLPCKHI YHKDCISQWL KQSKVCCVCK AEV
101: QQQDESANST DEDIHGNNSY IPERDAPSTS RTIIQHDDDD HFSGHHTHTS TRSNSSSISS LDLSTNENTD PANMTYEELN ELEDSMGNVD RGLSQRRILK
201: LPTYKYGAET KTCCWQIKKK KFIATDTQCS ICLVDYVMGD KITTLPCKHI YHKDCISQWL KQSKVCCVCK AEV
001: MSRLVNQSSV DENIAVYLQN ELSELTVNDY AIGREIQQQY QNKSICNDAA IALEIQKEEE ACVHSCLHDD EGLARTLQDL EANLQPSLSD DEKLARYLQE
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1PDK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.