Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11283 | Sorghum | nucleus | 38.36 | 34.01 |
| VIT_07s0031g00400.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 15.53 | 33.33 |
| Os04t0571200-01 | Rice | nucleus | 36.53 | 31.5 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 36.07 | 31.23 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 36.07 | 31.23 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 36.53 | 31.13 |
| PGSC0003DMT400037132 | Potato | nucleus | 33.79 | 30.96 |
| Solyc03g026150.2.1 | Tomato | nucleus | 33.33 | 30.8 |
| VIT_16s0022g00290.t01 | Wine grape | nucleus | 10.5 | 30.26 |
| VIT_11s0118g00640.t01 | Wine grape | nucleus | 16.44 | 30.25 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 35.62 | 29.43 |
| VIT_06s0004g01930.t01 | Wine grape | nucleus | 32.88 | 28.57 |
| VIT_07s0031g00380.t01 | Wine grape | cytosol | 9.13 | 28.57 |
| VIT_13s0064g01030.t01 | Wine grape | nucleus | 30.14 | 26.72 |
| VIT_18s0001g02280.t01 | Wine grape | nucleus | 25.11 | 26.57 |
| VIT_07s0031g00370.t01 | Wine grape | mitochondrion | 17.35 | 26.21 |
| Zm00001d002624_P003 | Maize | cytosol | 35.62 | 23.21 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 35.62 | 23.01 |
| CDY27083 | Canola | nucleus | 22.83 | 22.83 |
| CDX91624 | Canola | nucleus | 22.83 | 22.73 |
| AT5G52140.1 | Thale cress | nucleus | 26.94 | 21.07 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 28.77 | 20.45 |
| AT5G52155.1 | Thale cress | nucleus | 16.89 | 20.33 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 18.26 | 20.0 |
| CDY31919 | Canola | nucleus | 24.66 | 19.78 |
| CDY00512 | Canola | nucleus | 24.66 | 19.78 |
| Bra022579.1-P | Field mustard | cytosol | 10.96 | 18.18 |
| VIT_07s0031g00440.t01 | Wine grape | nucleus | 16.89 | 16.82 |
| Bra022580.1-P | Field mustard | cytosol | 12.79 | 15.56 |
| VIT_07s0031g00390.t01 | Wine grape | nucleus | 16.44 | 14.75 |
| CDX91625 | Canola | cytosol | 15.07 | 14.41 |
| Bra028293.1-P | Field mustard | nucleus | 14.16 | 12.97 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 21.46 | 12.67 |
| CDY27082 | Canola | cytosol | 13.7 | 12.61 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 18.72 | 11.68 |
| VIT_08s0040g02160.t01 | Wine grape | nucleus | 24.66 | 9.89 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 21.46 | 8.74 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 22.37 | 8.67 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 15.07 | 8.4 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 16.44 | 7.88 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 15.07 | 7.84 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 18.72 | 7.45 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 21.92 | 6.54 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 21.0 | 6.27 |
Protein Annotations
| EntrezGene:100248907 | wikigene:100248907 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BB | ProteinID:CCB47432 |
| ProteinID:CCB47432.1 | UniProt:F6H564 | EMBL:FN595235 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0040007 | GO:GO:0043161 | GO:GO:0046621 | GO:GO:0061630 |
| InterPro:IPR001841 | InterPro:IPR013083 | EntrezGene:LOC100248907 | wikigene:LOC100248907 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR14155 | PANTHER:PTHR14155:SF75 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002109A9E | ArrayExpress:VIT_12s0028g01220 |
| EnsemblPlantsGene:VIT_12s0028g01220 | EnsemblPlants:VIT_12s0028g01220.t01 | unigene:Vvi.17685 | RefSeq:XP_002282713 | RefSeq:XP_002282713.1 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:1843979..1851603
Molecular Weight (calculated)
24660.5 Da
IEP (calculated)
4.621
GRAVY (calculated)
-0.679
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVNAKSSH MQQHHSSSFE IVYQSLQASG QNNRNSNDDH CDQESRYLED GQSSNAESVE LQLAVDEAIA RSLMEEDFVD VSISEPSGTA EGDTEVTENA
101: EVRSVETSVA AVNQDNINPD DMTYEELQTL GESIGVESKG LSVKQIASLQ HTKFKEKKGF FTTKRIHKEC VICCVQFKHN EELITLSCKH DYHKDCIAKW
201: LEIKKNCPVC QREVELPDF
101: EVRSVETSVA AVNQDNINPD DMTYEELQTL GESIGVESKG LSVKQIASLQ HTKFKEKKGF FTTKRIHKEC VICCVQFKHN EELITLSCKH DYHKDCIAKW
201: LEIKKNCPVC QREVELPDF
001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
Arabidopsis Description
BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.