Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g026150.2.1 | Tomato | nucleus | 93.72 | 94.51 |
| PGSC0003DMT400079217 | Potato | cytosol | 15.9 | 38.38 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 30.96 | 33.79 |
| Os04t0571200-01 | Rice | nucleus | 35.56 | 33.46 |
| EES11283 | Sorghum | nucleus | 34.31 | 33.2 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 34.73 | 32.81 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 34.73 | 32.81 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 34.73 | 32.3 |
| PGSC0003DMT400082375 | Potato | nucleus | 33.05 | 32.11 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 35.56 | 32.08 |
| PGSC0003DMT400017553 | Potato | nucleus | 30.13 | 29.63 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 23.43 | 28.0 |
| PGSC0003DMT400020398 | Potato | nucleus | 20.5 | 27.68 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 37.24 | 26.25 |
| Zm00001d002624_P003 | Maize | cytosol | 33.89 | 24.11 |
| CDX91624 | Canola | nucleus | 22.18 | 24.09 |
| CDY27083 | Canola | nucleus | 21.76 | 23.74 |
| Bra022580.1-P | Field mustard | cytosol | 17.57 | 23.33 |
| AT5G52140.1 | Thale cress | nucleus | 27.2 | 23.21 |
| AT5G52155.1 | Thale cress | nucleus | 17.57 | 23.08 |
| CDY31919 | Canola | nucleus | 25.94 | 22.71 |
| CDY00512 | Canola | nucleus | 25.94 | 22.71 |
| CDX91625 | Canola | cytosol | 20.08 | 20.96 |
| CDY27082 | Canola | cytosol | 19.67 | 19.75 |
| Bra022579.1-P | Field mustard | cytosol | 10.04 | 18.18 |
| Bra028293.1-P | Field mustard | nucleus | 17.15 | 17.15 |
| PGSC0003DMT400078539 | Potato | plastid | 15.06 | 14.46 |
| PGSC0003DMT400095772 | Potato | cytosol | 9.21 | 11.83 |
| PGSC0003DMT400014732 | Potato | nucleus | 17.57 | 10.82 |
| PGSC0003DMT400054921 | Potato | nucleus | 18.83 | 8.67 |
| PGSC0003DMT400004449 | Potato | nucleus | 19.25 | 8.49 |
| PGSC0003DMT400039631 | Potato | nucleus | 18.41 | 8.21 |
| PGSC0003DMT400075959 | Potato | nucleus | 17.57 | 7.71 |
| PGSC0003DMT400066252 | Potato | nucleus | 23.01 | 7.69 |
| PGSC0003DMT400067670 | Potato | nucleus | 15.9 | 7.2 |
| PGSC0003DMT400039849 | Potato | nucleus | 20.5 | 7.07 |
| PGSC0003DMT400020528 | Potato | nucleus | 17.57 | 6.1 |
| PGSC0003DMT400032385 | Potato | nucleus | 18.41 | 5.42 |
Protein Annotations
| EntrezGene:102583422 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BB | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0040007 | GO:GO:0046621 | InterPro:IPR001841 | InterPro:IPR013083 |
| UniProt:M1B4V8 | PFAM:PF13639 | EnsemblPlantsGene:PGSC0003DMG400014316 | PGSC:PGSC0003DMG400014316 | EnsemblPlants:PGSC0003DMT400037132 | PFscan:PS50089 |
| PANTHER:PTHR14155 | PANTHER:PTHR14155:SF75 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002968CA8 | RefSeq:XP_006353353.1 |
| RefSeq:XP_006353354.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
Zinc finger, C3HC4 type family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014316]
Coordinates
chr3:-:42287751..42295171
Molecular Weight (calculated)
26969.3 Da
IEP (calculated)
4.550
GRAVY (calculated)
-0.760
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNGLLHSHY SSGGFPSEIA ENLKDFFPED SDLSYEEVLL QQETVYLSFQ ANGKNKNMSS EYGQTSNGHQ LSAQKGDSSQ SPESQLALDE AIARSLQLGD
101: DFEDYCRDEL NSTVAGIRES PPRESPPVRA ENPNTRRQDD IDLDSMTYEE LQILGEAVGQ QSRGLSQDLL SRLPTFKYKT GFFSKKKKMG ECVICYAAYK
201: SGDMLTTLPC AHMFHSECIN RWLKERKNCP LCYEEVKDE
101: DFEDYCRDEL NSTVAGIRES PPRESPPVRA ENPNTRRQDD IDLDSMTYEE LQILGEAVGQ QSRGLSQDLL SRLPTFKYKT GFFSKKKKMG ECVICYAAYK
201: SGDMLTTLPC AHMFHSECIN RWLKERKNCP LCYEEVKDE
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.