Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G418300.1 | Wheat | cytosol | 94.94 | 96.44 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 94.94 | 96.44 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 90.66 | 87.92 |
| Os04t0571200-01 | Rice | nucleus | 73.54 | 74.41 |
| EES11283 | Sorghum | nucleus | 66.15 | 68.83 |
| Zm00001d002624_P003 | Maize | cytosol | 63.81 | 48.81 |
| TraesCS5D01G319600.1 | Wheat | cytosol, nucleus, plastid | 31.52 | 47.37 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 52.92 | 40.12 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 31.13 | 36.53 |
| Solyc03g026150.2.1 | Tomato | nucleus | 33.46 | 36.29 |
| TraesCS7D01G049800.1 | Wheat | nucleus | 34.24 | 35.06 |
| PGSC0003DMT400037132 | Potato | nucleus | 32.3 | 34.73 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 33.07 | 31.48 |
| TraesCS5D01G286700.1 | Wheat | nucleus | 14.4 | 31.36 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 19.84 | 25.5 |
| CDX91624 | Canola | nucleus | 21.79 | 25.45 |
| CDY27083 | Canola | nucleus | 21.4 | 25.11 |
| CDY00512 | Canola | nucleus | 25.29 | 23.81 |
| Bra022579.1-P | Field mustard | cytosol | 12.06 | 23.48 |
| CDY31919 | Canola | nucleus | 24.9 | 23.44 |
| AT5G52140.1 | Thale cress | nucleus | 25.29 | 23.21 |
| TraesCS5D01G331600.1 | Wheat | cytosol, mitochondrion, nucleus | 29.57 | 22.35 |
| TraesCS7D01G271800.4 | Wheat | cytosol, mitochondrion, nucleus | 25.68 | 22.0 |
| AT5G52155.1 | Thale cress | nucleus | 15.18 | 21.43 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 16.34 | 21.0 |
| Bra022580.1-P | Field mustard | cytosol | 14.01 | 20.0 |
| CDX91625 | Canola | cytosol | 17.51 | 19.65 |
| CDY27082 | Canola | cytosol | 17.12 | 18.49 |
| Bra028293.1-P | Field mustard | nucleus | 16.73 | 17.99 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 16.73 | 12.43 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 17.12 | 11.83 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 18.68 | 9.09 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 17.12 | 8.4 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 17.12 | 8.21 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 16.34 | 8.11 |
| TraesCS2D01G516000.1 | Wheat | nucleus | 19.07 | 7.32 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 17.12 | 7.3 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 19.07 | 6.99 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 15.56 | 6.98 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BB | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0040007 | GO:GO:0046621 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF75 | SMART:SM00184 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS2D01G397800 |
| EnsemblPlants:TraesCS2D01G397800.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2D:-:509752303..509755927
Molecular Weight (calculated)
28602.6 Da
IEP (calculated)
5.215
GRAVY (calculated)
-0.616
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMEVLHDTT GKKEAVVYYM DAPLPYAIEE NFGGCFFEDD VDLAQVLQDQ EIVYQLIQGN DGSGLSRTHS DPGSSCGHPQ KSSGRRLTRG ANYESQLAVD
101: EALARDLQAM EDQIARATID DKKRKEDTCL GRKPVSSSTS NNGNTSVSRS SQVLTKDEVD PDNMTYEELQ QLGETIGTES KGLPEDVIAL LKSSTYKVGI
201: FSRKEKHDEC VICCMAYKNR DKLTTLPCQH QYHRTCVAKW LKINKVCPVC NKEVFGS
101: EALARDLQAM EDQIARATID DKKRKEDTCL GRKPVSSSTS NNGNTSVSRS SQVLTKDEVD PDNMTYEELQ QLGETIGTES KGLPEDVIAL LKSSTYKVGI
201: FSRKEKHDEC VICCMAYKNR DKLTTLPCQH QYHRTCVAKW LKINKVCPVC NKEVFGS
001: MSRLVNQSSV DENIAVYLQN ELSELTVNDY AIGREIQQQY QNKSICNDAA IALEIQKEEE ACVHSCLHDD EGLARTLQDL EANLQPSLSD DEKLARYLQE
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1PDK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.