Factsheet for TraesCS3D01G244600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G272400.4	Wheat	nucleus	98.11	98.11
TraesCS3A01G246900.3	Wheat	nucleus	97.54	97.72
HORVU3Hr1G061010.4	Barley	nucleus	93.37	93.73
Os01t0667700-02	Rice	nucleus	75.76	76.34
EES03404	Sorghum	nucleus	71.78	72.74
Zm00001d011541_P004	Maize	nucleus	71.21	70.94
TraesCS1D01G405800.9	Wheat	cytosol	41.29	41.6
TraesCS3D01G260700.1	Wheat	nucleus	11.36	30.0
CDY24110	Canola	nucleus	19.51	22.39
Bra039659.1-P	Field mustard	nucleus	19.51	22.39
TraesCS5D01G319600.1	Wheat	cytosol, nucleus, plastid	7.2	22.22
KRH26195	Soybean	nucleus	19.13	22.05
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	16.29	21.88
VIT_19s0014g01850.t01	Wine grape	nucleus	22.16	21.75
KRH55161	Soybean	nucleus	18.75	21.62
CDY68521	Canola	nucleus	17.99	21.54
KRH30071	Soybean	cytosol	14.02	21.51
PGSC0003DMT400039631	Potato	nucleus	21.78	21.46
Solyc12g014070.1.1	Tomato	nucleus	21.59	21.31
CDY26006	Canola	nucleus	18.56	21.21
TraesCS5D01G286700.1	Wheat	nucleus	4.73	21.19
AT1G53190.1	Thale cress	nucleus	19.7	21.05
CDX82450	Canola	nucleus	17.8	20.98
KRH55165	Soybean	nucleus	12.31	20.9
CDX97629	Canola	nucleus	17.42	20.86
Bra001582.1-P	Field mustard	nucleus	17.23	20.82
CDX75805	Canola	cytosol	17.42	20.77
Bra027282.1-P	Field mustard	nucleus	17.42	20.67
AT3G15070.1	Thale cress	nucleus	18.94	20.58
VIT_03s0097g00680.t01	Wine grape	nucleus	16.29	20.43
CDY25871	Canola	nucleus	18.37	20.29
CDY55839	Canola	nucleus	18.75	20.25
Bra038109.1-P	Field mustard	nucleus	18.37	20.21
TraesCS4D01G192500.2	Wheat	cytosol, nucleus, vacuole	10.23	20.0
VIT_03s0088g01090.t01	Wine grape	nucleus	17.05	19.69
TraesCS1D01G380000.2	Wheat	nucleus	12.88	19.65
KRH22017	Soybean	nucleus	19.51	19.51
Solyc10g007140.2.1	Tomato	nucleus	18.94	19.27
TraesCS2D01G432800.1	Wheat	nucleus	13.45	19.09
PGSC0003DMT400054921	Potato	nucleus	18.75	19.08
TraesCS2D01G397800.1	Wheat	cytosol	9.09	18.68
KRH55090	Soybean	nucleus	13.07	18.55
TraesCS3D01G105300.1	Wheat	cytosol	17.99	18.34
TraesCS1D01G111500.1	Wheat	nucleus	18.37	18.1
TraesCS7D01G049800.1	Wheat	nucleus	7.77	16.33
TraesCS2D01G516000.1	Wheat	nucleus	19.7	15.55
TraesCS5D01G331600.1	Wheat	cytosol, mitochondrion, nucleus	9.85	15.29
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	8.52	15.0
TraesCS2D01G022900.1	Wheat	nucleus	18.94	14.27
TraesCS6D01G111500.2	Wheat	nucleus	15.72	13.76
TraesCS7D01G420400.1	Wheat	nucleus	14.39	13.26
Solyc07g062720.1.1	Tomato	nucleus	18.56	12.65
PGSC0003DMT400032385	Potato	nucleus	18.94	12.32

Protein Annotations

EnsemblPlants:TraesCS3D01G244600.1	EnsemblPlantsGene:TraesCS3D01G244600	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF67	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16481	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3D:-:339848052..339857141

Molecular Weight (calculated)

57736.9 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.521

Length

528 amino acids

Sequence
(BLAST)

001: MAYRMVCAPQ VIDLESERGH PHVHSESLIH NGNDLSDQGG QYTVRVVGNA MNAGLSDTQG YYNMNMNHPH QPVHSSPPNL GVDSGFVFPS NMYNPCMSTS
101: MNRYASHAQS FGLPLNQVVS GSMDGSTRNE NVSETARGFI KRKNAAVAGS CHFVNGSASS SSSSHTSQNP THRPWDPSFE SNVFPNVTPF NPSEYHSHNT
201: WPSVEGSSIT GSNGFNLMAA HPESAQHGNY TFQSSHASQC FQPASTTWVS QAATGIVEGV PQWSYINAMS SVPAGRFAHS GATEIVNGGF HEYQNGPSTI
301: SQGHLPYFHQ HAVHSMQAHN PLDHTRVQVP YQQGHNNGVL HSGVNHSGNR FHLGPRTLGL FSNSERSFGP PQHPFLVNPV NHRNIRILPP LQHGAIMDFS
401: RLYEGSNVVD EHRDMRLDID SMTYEELLAL EEHIGDVNTG LAKSHIVDKL KTSLYVPGAT CVSNQSSEPS TENEACIICQ EEYKAEDCVG ILDCGHRYHA
501: ECLKQWLTVK NLCPICKTTA LSAGRRSG

Best Arabidopsis Sequence Match ( AT1G53190.1 )
(BLAST)

001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV

Arabidopsis Description

At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.