Factsheet for Bra038109.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25871	Canola	nucleus	98.75	99.16
CDY55839	Canola	nucleus	97.08	95.3
Bra039659.1-P	Field mustard	nucleus	76.25	79.57
AT1G53190.1	Thale cress	nucleus	78.75	76.52
Bra001582.1-P	Field mustard	nucleus	42.71	46.91
Bra027282.1-P	Field mustard	nucleus	42.5	45.84
VIT_19s0014g01850.t01	Wine grape	nucleus	37.92	33.83
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	23.96	29.26
KRH30071	Soybean	cytosol	20.83	29.07
KRH55161	Soybean	nucleus	27.29	28.6
VIT_03s0097g00680.t01	Wine grape	nucleus	25.0	28.5
VIT_03s0088g01090.t01	Wine grape	nucleus	27.08	28.45
KRH22017	Soybean	nucleus	30.83	28.03
KRH26195	Soybean	nucleus	26.46	27.73
Solyc12g014070.1.1	Tomato	nucleus	30.0	26.92
Solyc10g007140.2.1	Tomato	nucleus	28.75	26.59
PGSC0003DMT400054921	Potato	nucleus	28.75	26.59
PGSC0003DMT400039631	Potato	nucleus	29.58	26.49
Bra024009.1-P	Field mustard	nucleus	9.58	26.29
KRH55165	Soybean	nucleus	16.46	25.4
Bra019499.1-P	Field mustard	nucleus	8.33	24.39
KRH55090	Soybean	nucleus	18.75	24.19
Bra040450.1-P	Field mustard	nucleus	10.42	20.66
Bra027467.1-P	Field mustard	nucleus	17.29	20.24
Os01t0667700-02	Rice	nucleus	21.25	19.47
Bra022580.1-P	Field mustard	cytosol	7.08	18.89
Bra024007.1-P	Field mustard	nucleus	18.33	18.84
Os05t0564300-01	Rice	nucleus	19.38	18.6
HORVU1Hr1G087900.1	Barley	cytosol	20.0	18.46
TraesCS3B01G272400.4	Wheat	nucleus	20.21	18.37
TraesCS3D01G244600.1	Wheat	nucleus	20.21	18.37
TraesCS3A01G246900.3	Wheat	nucleus	20.0	18.22
HORVU3Hr1G061010.4	Barley	nucleus	19.79	18.06
Bra023101.1-P	Field mustard	nucleus	20.0	18.01
KXG22536	Sorghum	nucleus	18.75	17.72
Zm00001d009571_P002	Maize	nucleus	18.75	17.58
EES03404	Sorghum	nucleus	18.96	17.47
TraesCS1A01G398300.8	Wheat	cytosol	19.58	17.44
Zm00001d011541_P004	Maize	nucleus	19.17	17.36
TraesCS1D01G405800.9	Wheat	cytosol	18.75	17.18
Bra015967.1-P	Field mustard	nucleus	12.71	17.09
Bra017205.1-P	Field mustard	nucleus	18.96	16.95
TraesCS1B01G426200.9	Wheat	cytosol	19.17	16.79
Bra003830.1-P	Field mustard	nucleus, plastid	11.67	16.52
Solyc07g062720.1.1	Tomato	nucleus	26.67	16.52
PGSC0003DMT400032385	Potato	nucleus	27.71	16.38
Bra016574.1-P	Field mustard	nucleus	11.67	15.64
Bra033652.1-P	Field mustard	nucleus	20.0	15.61
Bra015221.1-P	Field mustard	nucleus	19.38	15.58
Bra006070.1-P	Field mustard	nucleus	15.83	15.35
Zm00001d039015_P002	Maize	cytosol	12.29	14.43
Bra039842.1-P	Field mustard	nucleus	17.92	14.41
Bra022579.1-P	Field mustard	cytosol	3.96	14.39
Bra009015.1-P	Field mustard	plastid	15.83	14.26
Bra014043.1-P	Field mustard	nucleus	17.08	14.24
Bra038240.1-P	Field mustard	nucleus	9.79	14.11
Bra022466.1-P	Field mustard	nucleus	9.38	13.89
Bra028293.1-P	Field mustard	nucleus	5.62	11.3
Bra009800.1-P	Field mustard	nucleus	8.75	10.24
Bra028576.1-P	Field mustard	cytosol	5.21	8.83
Bra036336.1-P	Field mustard	nucleus	8.12	7.75

Protein Annotations

EnsemblPlants:Bra038109.1	EnsemblPlants:Bra038109.1-P	EnsemblPlantsGene:Bra038109	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF48	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025477EB	UniProt:M4FAJ5	MapMan:35.1

Description

AT1G53190 (E=2e-158) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA05:-:10447685..10449455

Molecular Weight (calculated)

53271.5 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.746

Length

480 amino acids

Sequence
(BLAST)

001: MGQRNRTVDL EMEQQQQHQS QSSLQPGPCI LLSSFPQQQQ QPDNNNNNLP AMAASFPNLE ARSLQDPTSY DMFYGLPQYH HHHQLHQPAP PPNYYVPYMA
101: FQGPSSSSQG VVGVSSDQFM DHTRGTYKRK NAEGIPVMNH QSLSTLAAPF NNTPETIAPF GGPRSRPMNP VLPPPPPPHA PNSFIQGSYP GHHPFPPPGS
201: IWYDQHHGRP DGSPSFWPHP PYMHAGSIEF SSRNPTAFMY PPRDHYYPHP PPPPPPPHVQ GVRGPSATLY PPMASSSPSY GFPPGNFAPP QNTINRGGPS
301: GSEMGQVQPT GFRIYQRDDS VPLAALRQHR GGVPRFRMMP DDEVAILEFG DFLGGGSGNN HIDHHRDMRL DIEEMSYEEL LALSERIGTV NTGLPEEDVK
401: NHLKTRTCSV INLAAESPQT KDRETEPCTI CQESFKNEEK IATLDCGHEY HAGCLEKWLV VKNVCPICKA EALVMEKTTV

Best Arabidopsis Sequence Match ( AT1G53190.2 )
(BLAST)

001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV

Arabidopsis Description

At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.