Factsheet for VIT_03s0088g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0097g00680.t01	Wine grape	nucleus	90.08	84.09
VIT_03s0088g01090.t01	Wine grape	nucleus	95.93	82.49
VIT_19s0014g01850.t01	Wine grape	nucleus	88.3	64.5
VIT_16s0022g00290.t01	Wine grape	nucleus	7.89	40.79
VIT_07s0031g00380.t01	Wine grape	cytosol	6.36	35.71
KRH30071	Soybean	cytosol	30.79	35.17
KRH55161	Soybean	nucleus	38.93	33.41
VIT_07s0031g00400.t01	Wine grape	cytoskeleton, cytosol, nucleus	8.65	33.33
KRH26195	Soybean	nucleus	38.68	33.19
Solyc12g014070.1.1	Tomato	nucleus	44.53	32.71
PGSC0003DMT400039631	Potato	nucleus	44.02	32.28
KRH55165	Soybean	nucleus	24.94	31.51
KRH22017	Soybean	nucleus	41.98	31.25
KRH55090	Soybean	nucleus	28.5	30.11
Solyc10g007140.2.1	Tomato	nucleus	36.9	27.94
VIT_07s0031g00370.t01	Wine grape	mitochondrion	10.18	27.59
PGSC0003DMT400054921	Potato	nucleus	36.39	27.55
CDX97629	Canola	nucleus	27.48	24.49
CDX75805	Canola	cytosol	27.48	24.38
Bra001582.1-P	Field mustard	nucleus	26.97	24.26
CDY26006	Canola	nucleus	28.5	24.24
AT1G53190.1	Thale cress	nucleus	30.28	24.09
AT3G15070.1	Thale cress	nucleus	29.77	24.07
CDY25871	Canola	nucleus	29.26	24.06
CDY68521	Canola	nucleus	26.97	24.04
Bra038109.1-P	Field mustard	nucleus	29.26	23.96
CDX82450	Canola	nucleus	27.23	23.88
Bra027282.1-P	Field mustard	nucleus	26.97	23.82
CDY55839	Canola	nucleus	29.52	23.72
VIT_11s0118g00640.t01	Wine grape	nucleus	7.12	23.53
Bra039659.1-P	Field mustard	nucleus	27.23	23.26
CDY24110	Canola	nucleus	27.23	23.26
VIT_07s0031g00440.t01	Wine grape	nucleus	11.45	20.45
VIT_08s0040g02160.t01	Wine grape	nucleus	26.72	19.23
VIT_07s0031g00390.t01	Wine grape	nucleus	11.2	18.03
EES03404	Sorghum	nucleus	23.66	17.85
Os01t0667700-02	Rice	nucleus	22.65	16.98
VIT_18s0001g02280.t01	Wine grape	nucleus	8.91	16.91
Zm00001d011541_P004	Maize	nucleus	22.65	16.79
Solyc07g062720.1.1	Tomato	nucleus	32.82	16.65
Os05t0564300-01	Rice	nucleus	20.87	16.4
TraesCS3A01G246900.3	Wheat	nucleus	21.88	16.32
TraesCS3D01G244600.1	Wheat	nucleus	21.88	16.29
TraesCS3B01G272400.4	Wheat	nucleus	21.88	16.29
HORVU3Hr1G061010.4	Barley	nucleus	21.37	15.97
KXG22536	Sorghum	nucleus	20.61	15.94
PGSC0003DMT400032385	Potato	nucleus	32.82	15.89
VIT_01s0011g04080.t01	Wine grape	nucleus	13.74	15.38
Zm00001d009571_P002	Maize	nucleus	19.85	15.23
VIT_13s0019g04100.t01	Wine grape	extracellular	21.88	15.22
VIT_12s0028g01220.t01	Wine grape	nucleus	8.4	15.07
VIT_17s0000g03210.t01	Wine grape	nucleus	13.99	14.82
VIT_18s0001g10260.t01	Wine grape	nucleus	25.95	13.9
VIT_06s0004g01930.t01	Wine grape	nucleus	8.91	13.89
HORVU1Hr1G087900.1	Barley	cytosol	18.32	13.85
VIT_13s0064g01030.t01	Wine grape	nucleus	8.65	13.77
TraesCS1A01G398300.8	Wheat	cytosol	18.83	13.73
TraesCS1D01G405800.9	Wheat	cytosol	18.07	13.55
TraesCS1B01G426200.9	Wheat	cytosol	18.58	13.32
VIT_10s0042g00580.t01	Wine grape	nucleus	9.41	12.01
Zm00001d039015_P002	Maize	cytosol	12.47	11.98
VIT_03s0063g00160.t01	Wine grape	nucleus	21.37	11.44
VIT_04s0008g02390.t01	Wine grape	nucleus	14.76	10.55

Protein Annotations

ArrayExpress:VIT_03s0088g00930	EMBL:FN595512	EnsemblPlants:VIT_03s0088g00930.t01	EnsemblPlantsGene:VIT_03s0088g00930	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF48	PFAM:PF13639
PFscan:PS50089	ProteinID:CBI25091	ProteinID:CBI25091.3	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0001BE256F	UniProt:D7T3L0	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3:-:9146189..9147403

Molecular Weight (calculated)

42596.5 Da

IEP (calculated)

7.027

GRAVY (calculated)

-0.588

Length

393 amino acids

Sequence
(BLAST)

001: MNHGPSGQLP SSSNHGVIGV STYDRKNSQG IQGNFQYFNG FASSSSSAPP FNTRHLEFGV PVMDSASFAF AQPQYRGNNA PSIMEVGSHR SVRNRSGGVG
101: LDSVLAHNHY HLVQGNYIGH PFQPSGDPWV DQQSGNNGSG GGTLAWNHGP ALPYLHGSNI SGGSREAGNV GIQGYHDTSS GRSSTDYLQP PVLHRHHNLH
201: YPPPPPPMQG ARSHFHPQVV ASSYRLATIS SRSPVPPQVG VEAGHRHPGP VPPTWIRIDR SHRGGVAPEA TSRHGNLPYL RTLPEEEVAI LDLSASYQVG
301: EVSTGLSEES ITNCLKTRTY ISSTCLNLEE GASMDQENDS CIICQEEYEN EEKIGFLDCG HEYHADCLKK WVLVKNVCPL CRAPAMTPKK KDV

Best Arabidopsis Sequence Match ( AT3G15070.2 )
(BLAST)

001: MRQRNMMTGS DMEQNSQSFV PHPEPRIGTN YLYPDIPPVN TVPHLEAHSL QEPYDNNSMF YGPPQYHHQH ASNLGSGMST APNFYVPYVN YEAPPSFLLS
101: HGSNDAVVGV TSTEHERNAH FMDHGFKRKS SEVIPGNSQY PVAPCSFPQL NTSETAPFSF PHFGTYPQPL DQRSVRNRAG AATMDPLLSH GHNNFSQGNY
201: AAHPFPPLGS IWYDQHCNGN RSDGSSSLWS QAPAVPYMHG NIATGSIESG NVCFPRYHET SSSRNPTPSV YQRNHYISHH PVPPPPIVYP HMPSASYAET
301: LHPASYSHMG QVQSTGFRIN QYPGEDFVPA AILRHRELPH FRAMPANENA FWEVGDFYNA VNYVDHHQDM RLDIEDMSYE ELLALSDQIG TVKTGLSSED
401: VKELLKRRTS TRINLEEGPS TDLETDSCTI CQENYKNEDK IATLDCMHKY HAECLKKWLV IKNVCPICKS EALVIEKKKK LRLSSR

Arabidopsis Description

At3g15070/K15M2_22 [Source:UniProtKB/TrEMBL;Acc:Q94F54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.