Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039659.1-P | Field mustard | nucleus | 99.57 | 99.57 |
| CDY26006 | Canola | nucleus | 93.48 | 93.07 |
| AT1G53190.1 | Thale cress | nucleus | 82.83 | 77.13 |
| CDY25871 | Canola | nucleus | 78.48 | 75.52 |
| CDY55839 | Canola | nucleus | 79.35 | 74.64 |
| CDX75805 | Canola | cytosol | 46.52 | 48.31 |
| CDX82450 | Canola | nucleus | 46.3 | 47.54 |
| CDX97629 | Canola | nucleus | 43.7 | 45.58 |
| CDY68521 | Canola | nucleus | 42.83 | 44.67 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 38.04 | 32.53 |
| KRH55161 | Soybean | nucleus | 29.57 | 29.69 |
| KRH30071 | Soybean | cytosol | 21.74 | 29.07 |
| KRH26195 | Soybean | nucleus | 28.7 | 28.82 |
| KRH22017 | Soybean | nucleus | 32.61 | 28.41 |
| Solyc12g014070.1.1 | Tomato | nucleus | 32.17 | 27.66 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 27.39 | 27.57 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 25.22 | 27.55 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 23.26 | 27.23 |
| PGSC0003DMT400039631 | Potato | nucleus | 31.52 | 27.05 |
| PGSC0003DMT400054921 | Potato | nucleus | 30.43 | 26.98 |
| Solyc10g007140.2.1 | Tomato | nucleus | 30.22 | 26.78 |
| CDY13429 | Canola | cytosol | 15.0 | 26.74 |
| KRH55165 | Soybean | nucleus | 18.04 | 26.69 |
| KRH55090 | Soybean | nucleus | 19.57 | 24.19 |
| CDY53710 | Canola | nucleus | 11.52 | 21.9 |
| CDX77848 | Canola | nucleus | 10.0 | 21.7 |
| CDY67192 | Canola | nucleus | 10.0 | 21.6 |
| CDX93901 | Canola | nucleus | 11.09 | 21.25 |
| CDX97032 | Canola | plastid | 15.0 | 20.6 |
| CDY71882 | Canola | plastid | 15.22 | 20.0 |
| CDY32973 | Canola | nucleus | 17.61 | 19.76 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 22.61 | 19.7 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 22.39 | 19.54 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 22.39 | 19.51 |
| Os01t0667700-02 | Rice | nucleus | 22.17 | 19.47 |
| CDY43590 | Canola | nucleus | 17.61 | 19.24 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 21.96 | 19.2 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 20.87 | 18.46 |
| EES03404 | Sorghum | nucleus | 20.87 | 18.43 |
| CDX91624 | Canola | nucleus | 8.7 | 18.18 |
| Zm00001d011541_P004 | Maize | nucleus | 20.87 | 18.11 |
| Os05t0564300-01 | Rice | nucleus | 19.57 | 18.0 |
| KXG22536 | Sorghum | nucleus | 19.78 | 17.91 |
| CDX79718 | Canola | nucleus | 20.65 | 17.89 |
| CDY27083 | Canola | nucleus | 8.48 | 17.81 |
| CDY63645 | Canola | nucleus | 17.83 | 17.75 |
| CDY55435 | Canola | nucleus | 20.22 | 17.61 |
| Zm00001d009571_P002 | Maize | nucleus | 19.57 | 17.58 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 20.0 | 17.56 |
| CDX91625 | Canola | cytosol | 8.7 | 17.47 |
| TraesCS1A01G398300.8 | Wheat | cytosol | 20.43 | 17.44 |
| CDY11092 | Canola | cytosol, plastid | 13.04 | 17.24 |
| CDY13433 | Canola | nucleus | 17.39 | 17.17 |
| CDY68424 | Canola | nucleus | 20.0 | 17.13 |
| CDX85750 | Canola | nucleus | 14.35 | 17.1 |
| CDY46757 | Canola | nucleus | 19.78 | 17.07 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 20.22 | 16.97 |
| Solyc07g062720.1.1 | Tomato | nucleus | 28.48 | 16.9 |
| CDY60141 | Canola | plastid | 13.04 | 16.81 |
| CDX83878 | Canola | nucleus | 13.04 | 16.81 |
| PGSC0003DMT400032385 | Potato | nucleus | 29.57 | 16.75 |
| CDX73013 | Canola | plastid | 12.61 | 16.34 |
| CDX96741 | Canola | nucleus | 12.83 | 16.21 |
| CDY00512 | Canola | nucleus | 9.57 | 16.12 |
| CDY31919 | Canola | nucleus | 9.57 | 16.12 |
| CDX68213 | Canola | nucleus, plastid | 12.17 | 16.05 |
| CDY68658 | Canola | nucleus | 16.3 | 15.99 |
| CDY27082 | Canola | cytosol | 8.26 | 15.97 |
| CDX95473 | Canola | nucleus | 16.09 | 15.95 |
| CDX70363 | Canola | nucleus | 16.74 | 15.84 |
| CDY17114 | Canola | nucleus | 18.26 | 15.82 |
| CDX78393 | Canola | nucleus | 16.96 | 15.79 |
| CDX88140 | Canola | nucleus | 16.3 | 15.56 |
| CDX97044 | Canola | nucleus | 16.96 | 15.29 |
| CDX69813 | Canola | mitochondrion | 17.17 | 14.82 |
| CDY22376 | Canola | nucleus | 19.78 | 14.8 |
| Zm00001d039015_P002 | Maize | cytosol | 13.04 | 14.67 |
| CDY24595 | Canola | nucleus | 9.78 | 14.29 |
| CDY17061 | Canola | nucleus | 18.7 | 14.19 |
| CDY62314 | Canola | nucleus | 18.26 | 14.19 |
| CDX71531 | Canola | nucleus | 19.57 | 14.13 |
| CDY43220 | Canola | nucleus | 18.7 | 14.12 |
| CDY37230 | Canola | nucleus | 18.04 | 14.09 |
| CDY25357 | Canola | nucleus | 9.78 | 14.06 |
| CDY40109 | Canola | nucleus | 5.65 | 13.98 |
| CDY33429 | Canola | nucleus | 9.78 | 13.64 |
| CDY42218 | Canola | nucleus | 9.78 | 13.47 |
| CDY47948 | Canola | nucleus | 7.17 | 6.56 |
| CDY69560 | Canola | nucleus | 6.3 | 5.7 |
| CDY36635 | Canola | nucleus | 6.74 | 5.2 |
Protein Annotations
| EnsemblPlants:CDY24110 | EnsemblPlantsGene:GSBRNA2T00024660001 | Gene3D:3.30.40.10 | GO:A0A078GCA8 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF48 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY24110 | ProteinID:CDY24110.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EEE504 |
| UniProt:A0A078GCA8 | MapMan:35.1 | : | : | : | : |
Description
BnaA06g01080DBnaA06g01080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCA8]
Coordinates
chrLK032153:-:505361..508779
Molecular Weight (calculated)
50734.7 Da
IEP (calculated)
6.793
GRAVY (calculated)
-0.623
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQRNRSVDL EMEQQQHHQT QASLQPGPCL LLGSFPPPAM VANVPNSLQD NSAMFYGLPQ YHHHHQPPPT NYYAPYVAFQ APPSQLPSSS SHEMNAHFMD
101: HTPGAYKRKN AEGIPVNPHL AAPFNNAPET VAPFGGARSR PGALTMNPVL PPPPPHAPNV FIQGNYAGHH PFPPPGSIWY DQHLGRPDGS PSFWPHSPYM
201: QGSNIVAGSL ESSSRNPAPF IFPSPLNPRD HYYSHHHLPA PPPVQGVRGQ SATLYPPMAS SPSYRVPFGN FAPQNTSNLG PEMGPVQPTG FRIYQHPPPL
301: AALRQHRGGV PRLRVMPDDE AAILEFGDFL GGSGNNHVDH HRDMRLDIEE MSYEELLALS ERIGTVNTGL PEEDVKNHLK TRTCSVINVT EGSSSSSPQT
401: KDRETEPCTI CQESFKNEEK IATLDCGHEY HAECLEKWLI VKNVCPICKS EALVMEKRKV
101: HTPGAYKRKN AEGIPVNPHL AAPFNNAPET VAPFGGARSR PGALTMNPVL PPPPPHAPNV FIQGNYAGHH PFPPPGSIWY DQHLGRPDGS PSFWPHSPYM
201: QGSNIVAGSL ESSSRNPAPF IFPSPLNPRD HYYSHHHLPA PPPVQGVRGQ SATLYPPMAS SPSYRVPFGN FAPQNTSNLG PEMGPVQPTG FRIYQHPPPL
301: AALRQHRGGV PRLRVMPDDE AAILEFGDFL GGSGNNHVDH HRDMRLDIEE MSYEELLALS ERIGTVNTGL PEEDVKNHLK TRTCSVINVT EGSSSSSPQT
401: KDRETEPCTI CQESFKNEEK IATLDCGHEY HAECLEKWLI VKNVCPICKS EALVMEKRKV
001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
Arabidopsis Description
At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.