CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	golgi
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69560	Canola	nucleus	74.83	87.62
CDY62314	Canola	nucleus	50.5	50.84
CDY37230	Canola	nucleus	50.17	50.76
KRH05663	Soybean	cytosol	16.95	17.38
CDY22376	Canola	nucleus	16.78	16.26
CDY47948	Canola	nucleus	13.26	15.71
CDX71531	Canola	nucleus	16.78	15.7
CDY17114	Canola	nucleus	12.75	14.31
CDY17061	Canola	nucleus	13.42	13.2
CDY43220	Canola	nucleus	13.42	13.14
CDY32973	Canola	nucleus	8.39	12.2
CDY43590	Canola	nucleus	8.56	12.11
GSMUA_Achr4P06080_001	Banana	nucleus	6.88	8.86
CDY68658	Canola	nucleus	6.21	7.89
CDY26006	Canola	nucleus	6.04	7.79
CDY25871	Canola	nucleus	6.21	7.74
CDX68213	Canola	nucleus, plastid	4.53	7.74
CDX88140	Canola	nucleus	6.21	7.68
CDX82450	Canola	nucleus	5.7	7.59
CDY55839	Canola	nucleus	6.04	7.36
CDX73013	Canola	plastid	4.36	7.32
CDY46757	Canola	nucleus	6.54	7.32
CDX78393	Canola	nucleus	6.04	7.29
CDY68424	Canola	nucleus	6.54	7.26
CDX75805	Canola	cytosol	5.37	7.22
CDY55435	Canola	nucleus	6.38	7.2
CDY60141	Canola	plastid	4.19	7.0
CDX97629	Canola	nucleus	5.03	6.8
CDX70363	Canola	nucleus	5.54	6.79
CDX79718	Canola	nucleus	6.04	6.78
CDX69813	Canola	mitochondrion	6.04	6.75
CDY24110	Canola	nucleus	5.2	6.74
CDY11092	Canola	cytosol, plastid	3.86	6.61
CDY71882	Canola	plastid	3.69	6.29
CDX97044	Canola	nucleus	5.37	6.27
CDX95473	Canola	nucleus	4.87	6.25
CDY68521	Canola	nucleus	4.53	6.12
CDX97032	Canola	plastid	3.19	5.67
CDX85750	Canola	nucleus	3.52	5.44
CDY24595	Canola	nucleus	2.85	5.4
CDX83878	Canola	nucleus	3.19	5.32
CDY25357	Canola	nucleus	2.85	5.31
Zm00001d015323_P002	Maize	cytosol	1.01	5.31
CDX96741	Canola	nucleus	3.19	5.22
CDY33429	Canola	nucleus	2.68	4.85
CDY42218	Canola	nucleus	2.68	4.79
CDX77848	Canola	nucleus	1.68	4.72
CDY40109	Canola	nucleus	1.34	4.3
CDY67192	Canola	nucleus	1.51	4.23
CDX91624	Canola	nucleus	1.51	4.09
CDY00512	Canola	nucleus	1.85	4.03
CDY31919	Canola	nucleus	1.85	4.03
CDX93901	Canola	nucleus	1.51	3.75
CDY53710	Canola	nucleus	1.51	3.72
CDY27083	Canola	nucleus	1.34	3.65
CDY13433	Canola	nucleus	2.85	3.65
CDY63645	Canola	nucleus	2.52	3.25
CDY13429	Canola	cytosol	1.34	3.1
CDX91625	Canola	cytosol	1.01	2.62
CDY27082	Canola	cytosol	0.84	2.1

Protein Annotations

EnsemblPlants:CDY36635	EnsemblPlantsGene:GSBRNA2T00062371001	PANTHER:PTHR22937	PANTHER:PTHR22937:SF101	ProteinID:CDY36635	ProteinID:CDY36635.1
SEG:seg	UniParc:UPI0004EE7085	UniProt:A0A078HE56	MapMan:35.1	:	:

Description

BnaA07g04220DBnaA07g04220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE56]

Coordinates

chrLK032380:+:59152..65331

Molecular Weight (calculated)

64542.0 Da

IEP (calculated)

10.296

GRAVY (calculated)

-0.675

Length

596 amino acids

Sequence
(BLAST)

001: MSLACSVNRG GRAITFAFKK KNKIEKETEN RAEEKRHPPT KFSISTKIRF SFDLDSFRDV QIGRLAHCKI GFLIWHLIRF GWEAILLGAK AKQAAPGDVL
101: NGILKVLVTF DRVRACVLGR ERVMNPMQGP RNSDVNQGDS NEPEMNPLVE NEFSNSGTTP SGRPAQNHNW WRFGESSSAN HQLPPQDGYG GPSFLRGSGS
201: NAMSMDMDSD GYGAQTSGVV FRHSNYGSSL GSSVQAAGES SSGPASSLGL WGSSCKRKAL EGVPTAETPD FVSHNDNAAH PRYGASSSLT LATPSQTSPN
301: PFGRTEPLFG GTRPAASTNA FHSVRNTDTS SRPGRRLNPR QPQESVAFSI SLGGTSVRPT GSLQQNIDPR STAFASGSSS GEHPSNIVHH PALTRNIHQF
401: SWDRGSGSSG VEMPQWETPR SNPEQPTMFA PPTDIRNPVH DQSMWSFTRG SPVDSPFASR GGPSSAIHGQ QQQPSNPAWI PPQSGPIHDP TRASELSPWS
501: LFPSIESQSA SHGPLLPTGP SLSSNEAAMP SSSNSRSHRS RQRRSGLLSE RQNELLHLRH LGRSLAADSD GRNHLISEIR QVLSAMRRGE SLRIEV

Best Arabidopsis Sequence Match ( AT2G15530.5 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.