Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47948 | Canola | nucleus | 70.06 | 73.96 |
| KRH05664 | Soybean | nucleus | 14.69 | 64.46 |
| CDY43220 | Canola | nucleus | 66.29 | 57.8 |
| CDY17061 | Canola | nucleus | 65.16 | 57.1 |
| AT1G45180.3 | Thale cress | nucleus | 65.35 | 53.8 |
| CDY32973 | Canola | nucleus | 40.3 | 52.2 |
| CDY43590 | Canola | nucleus | 41.05 | 51.78 |
| CDY22376 | Canola | nucleus | 52.17 | 45.04 |
| CDX71531 | Canola | nucleus | 53.86 | 44.9 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 42.37 | 30.65 |
| PGSC0003DMT400039849 | Potato | nucleus | 38.61 | 29.58 |
| Solyc04g078680.2.1 | Tomato | nucleus | 39.92 | 29.36 |
| Solyc12g088740.1.1 | Tomato | nucleus | 38.23 | 29.29 |
| KRH52013 | Soybean | nucleus | 36.91 | 27.68 |
| PGSC0003DMT400020528 | Potato | nucleus | 34.65 | 26.71 |
| KRH61306 | Soybean | nucleus | 32.2 | 26.15 |
| KRH61311 | Soybean | nucleus | 35.59 | 25.75 |
| CDY13429 | Canola | cytosol | 12.43 | 25.58 |
| CDY62314 | Canola | nucleus | 28.25 | 25.34 |
| CDY37230 | Canola | nucleus | 27.87 | 25.13 |
| CDX77848 | Canola | nucleus | 9.79 | 24.53 |
| CDY67192 | Canola | nucleus | 9.79 | 24.41 |
| CDX97032 | Canola | plastid | 13.94 | 22.09 |
| CDY71882 | Canola | plastid | 14.31 | 21.71 |
| CDX93901 | Canola | nucleus | 9.79 | 21.67 |
| CDY53710 | Canola | nucleus | 9.79 | 21.49 |
| CDY60141 | Canola | plastid | 13.56 | 20.17 |
| CDX79718 | Canola | nucleus | 19.96 | 19.96 |
| CDX68213 | Canola | nucleus, plastid | 12.99 | 19.77 |
| CDX73013 | Canola | plastid | 13.18 | 19.72 |
| CDY11092 | Canola | cytosol, plastid | 12.81 | 19.54 |
| CDY46757 | Canola | nucleus | 19.59 | 19.51 |
| CDX85750 | Canola | nucleus | 14.12 | 19.43 |
| CDY40109 | Canola | nucleus | 6.78 | 19.35 |
| CDX83878 | Canola | nucleus | 12.99 | 19.33 |
| CDX91624 | Canola | nucleus | 7.91 | 19.09 |
| CDX96741 | Canola | nucleus | 12.99 | 18.96 |
| CDY26006 | Canola | nucleus | 16.38 | 18.83 |
| CDY27083 | Canola | nucleus | 7.72 | 18.72 |
| CDY25871 | Canola | nucleus | 16.76 | 18.62 |
| CDY68424 | Canola | nucleus | 18.64 | 18.44 |
| CDY24595 | Canola | nucleus | 10.92 | 18.41 |
| CDY24110 | Canola | nucleus | 15.82 | 18.26 |
| CDY25357 | Canola | nucleus | 10.92 | 18.12 |
| CDY55839 | Canola | nucleus | 16.57 | 18.0 |
| CDY55435 | Canola | nucleus | 17.89 | 17.99 |
| CDY33429 | Canola | nucleus | 11.11 | 17.88 |
| CDY42218 | Canola | nucleus | 10.92 | 17.37 |
| CDX91625 | Canola | cytosol | 7.34 | 17.03 |
| CDX97629 | Canola | nucleus | 14.12 | 17.01 |
| CDX75805 | Canola | cytosol | 14.12 | 16.93 |
| CDX95473 | Canola | nucleus | 14.69 | 16.81 |
| CDY68658 | Canola | nucleus | 14.69 | 16.63 |
| CDX78393 | Canola | nucleus | 15.44 | 16.6 |
| CDY63645 | Canola | nucleus | 14.31 | 16.45 |
| CDX88140 | Canola | nucleus | 14.88 | 16.39 |
| CDX70363 | Canola | nucleus | 14.88 | 16.26 |
| CDX97044 | Canola | nucleus | 15.44 | 16.08 |
| CDX82450 | Canola | nucleus | 13.56 | 16.07 |
| CDY69560 | Canola | nucleus | 15.25 | 15.91 |
| CDY68521 | Canola | nucleus | 13.18 | 15.87 |
| CDX69813 | Canola | mitochondrion | 15.82 | 15.76 |
| CDY13433 | Canola | nucleus | 13.75 | 15.67 |
| CDY00512 | Canola | nucleus | 7.91 | 15.38 |
| CDY27082 | Canola | cytosol | 6.78 | 15.13 |
| CDY31919 | Canola | nucleus | 7.72 | 15.02 |
| CDY36635 | Canola | nucleus | 14.31 | 12.75 |
Protein Annotations
| EnsemblPlants:CDY17114 | EnsemblPlantsGene:GSBRNA2T00095165001 | Gene3D:3.30.40.10 | GO:A0A078FVJ9 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY17114 | ProteinID:CDY17114.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EB50A5 |
| UniProt:A0A078FVJ9 | MapMan:35.1 | : | : | : | : |
Description
BnaC06g00470DBnaC06g00470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVJ9]
Coordinates
chrLK032070:+:692084..694042
Molecular Weight (calculated)
57683.5 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.608
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGERASMGE ALNFENGSSS TNPVVDQQIR WGNRHSIGDN DLQNYMNSAA DTTNTSFANS VYPEQREGSS GGAKNEAPTI ITEQWMVEFM QPSSSANGVV
101: GDLNAEQNGL ESGLIIPENG GSCADGQRKR KALDAGIGQS NVGFREFHRG ESSSLNMSLN HGPRGLGPGG VPNLSAPPAI IPDSSNRNFS VRADPENVFA
201: AGTVIRQPIA PSLSAPGDQQ LVDLRYRHAF GNYTPLNPNA SAGTTIPPLS RNMTPPFQWN PAAAAGGSSV VVERSNMLAN ALFVPPPGVT NLPHGHVSGP
301: WNSVQPSPSL TPYQNNSAQN QRRLSEHLRR RSLLSSAPLD QHVLHQSGGD ATFQAQSRAF SRVVPRQGQT TNGVPQSSRG RGRLAELRNV LEQMRRTGTL
401: RLEDVMLLNQ SMLGAAGIHD RYRDMRLDVD NMSYEELLSL GERIGDVCTG LNEETISNRL KQRKYSSDTR CPQEIEPCCI CQEEYNEGEE LGMLECGHGF
501: HSQCIKEWLK QKNLCPICKT TGLNTVEKPG I
101: GDLNAEQNGL ESGLIIPENG GSCADGQRKR KALDAGIGQS NVGFREFHRG ESSSLNMSLN HGPRGLGPGG VPNLSAPPAI IPDSSNRNFS VRADPENVFA
201: AGTVIRQPIA PSLSAPGDQQ LVDLRYRHAF GNYTPLNPNA SAGTTIPPLS RNMTPPFQWN PAAAAGGSSV VVERSNMLAN ALFVPPPGVT NLPHGHVSGP
301: WNSVQPSPSL TPYQNNSAQN QRRLSEHLRR RSLLSSAPLD QHVLHQSGGD ATFQAQSRAF SRVVPRQGQT TNGVPQSSRG RGRLAELRNV LEQMRRTGTL
401: RLEDVMLLNQ SMLGAAGIHD RYRDMRLDVD NMSYEELLSL GERIGDVCTG LNEETISNRL KQRKYSSDTR CPQEIEPCCI CQEEYNEGEE LGMLECGHGF
501: HSQCIKEWLK QKNLCPICKT TGLNTVEKPG I
001: MQGERASLGS LSKALNFERG STSSNAVVDQ QIRWENLHNY GDNDLQDYMS SAADTNPTFA NSVYHEKRGL QRFNIGEASS SGTKNEGASL TEQWKGIGRF
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR
Arabidopsis Description
F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.