Factsheet for Solyc04g078680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g013620.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42940.1	Solyc12g013620.1.1	AT1G52890.1	12646039

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020528	Potato	nucleus	90.44	94.78
KRH05664	Soybean	nucleus	12.19	72.73
Solyc12g088740.1.1	Tomato	nucleus	56.65	59.02
VIT_18s0001g10260.t01	Wine grape	nucleus	53.74	52.86
KRH52013	Soybean	nucleus	46.26	47.18
KRH61306	Soybean	nucleus	41.55	45.87
Bra027467.1-P	Field mustard	nucleus	25.35	44.63
KRH61311	Soybean	nucleus	44.88	44.14
CDY32973	Canola	nucleus	24.93	43.9
CDY43590	Canola	nucleus	25.21	43.23
CDY17114	Canola	nucleus	29.36	39.92
CDY17061	Canola	nucleus	32.83	39.11
CDY43220	Canola	nucleus	32.41	38.42
CDX71531	Canola	nucleus	33.24	37.68
CDY22376	Canola	nucleus	31.99	37.56
Bra033652.1-P	Field mustard	nucleus	31.99	37.56
Bra014043.1-P	Field mustard	nucleus	29.92	37.5
AT1G45180.3	Thale cress	nucleus	33.24	37.21
AT5G42940.1	Thale cress	nucleus	34.21	35.75
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	31.86	31.68
Solyc01g107930.2.1	Tomato	nucleus	31.44	31.62
Solyc01g107940.2.1	Tomato	nucleus	30.89	31.54
Solyc12g040390.1.1	Tomato	nucleus, plastid	11.77	27.87
Solyc12g010500.1.1	Tomato	nucleus	6.79	27.37
Solyc03g118840.2.1	Tomato	nucleus	13.57	25.32
Solyc05g008840.1.1	Tomato	nucleus, plastid	6.93	22.73
Solyc12g019190.1.1	Tomato	mitochondrion	6.79	22.27
Solyc09g007530.2.1	Tomato	nucleus	16.48	21.96
Solyc12g019200.1.1	Tomato	mitochondrion	6.65	21.82
Solyc12g014070.1.1	Tomato	nucleus	15.93	21.5
Solyc08g006460.2.1	Tomato	nucleus	15.79	21.47
Solyc12g096420.1.1	Tomato	nucleus	16.07	21.05
Solyc11g062260.1.1	Tomato	nucleus	7.06	20.73
Solyc10g007140.2.1	Tomato	nucleus	14.54	20.23
Solyc09g007620.1.1	Tomato	nucleus	4.43	18.29
Solyc03g026150.2.1	Tomato	nucleus	5.96	18.14
Solyc01g087060.2.1	Tomato	nucleus	7.76	15.14
Solyc02g005480.2.1	Tomato	nucleus	5.12	13.81
Solyc07g062720.1.1	Tomato	nucleus	14.68	13.68

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4BUV3	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g078680.2
EnsemblPlants:Solyc04g078680.2.1	UniParc:UPI0002766C26	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:63379078..63383131

Molecular Weight (calculated)

78494.9 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.709

Length

722 amino acids

Sequence
(BLAST)

001: MQGQRSAIGS LPETLGFTHG STSSDGGIDQ QICWNNLRNP AQNRLPDYMV PSNETTIPFL SHANQERQSV IGWNLGESSS SNTQNSVSRS ENTTMSARPG
101: PSHFSAEQHY GSSNILSLGD VEINLNNQLA NNTLFSQAST SSTVPNELSR SAGHEGRDGD EDDDDDCEVM ECTPTFKSNG PGKERMSTAS TSSDPLAGTS
201: ATNGFLRDES DGRPGCTLDG RRMACKRKAV EGHLGQSSGS GSPDYLLNSL WRSIPAPNNL TAGANSSAST ESRRNINLPA QINPRLGLTM GGTTMEGPVA
301: LPASRRAESY RRNFRLRING SHQQVPIPGN TFPTVGNDRN VTMSDWDALR LPSNQSLDSR SVSAADNVSP RSQPVVGPVP SLRRNAQRWD SSSSRAGSPS
401: SYSVFLERNS AAYEQPSSRS VPRNISQHPM FIPASDLRNL NQNPVNWGLA GGNISIAGNV ASSSRSGPSS VAPSSSPGWV EQRNPQQYPR RLSEYVRRSM
501: LSSAVSEPGS HNGNTPPHLS SATSQEMGLS GHPGHRPSSS RSALLLERQL DGAMGVPYSW RTLAAAGEGR GRLVSEQIRN VLDLMRRGES LRFEDVMILD
601: QSGFFGMVDI QDRHRDMRLD VDNMSYEELL ALEERIGNVC TGLTEETILN RLKQRKHVSI RTEETNDAEP CCICQEEYKD GEDLGKLDCG HDFHADCVKQ
701: WLMQKNLCPI CKTTGLNTSG KQ

Best Arabidopsis Sequence Match ( AT1G45180.4 )
(BLAST)

001: MQGERASLGS LSKALNFERG STSSNAVVDQ QIRWENLHNY GDNDLQDYMS SAADTNPTFA NSVYHEKRGL QRFNIGEASS SGTKNEGASL TEQWKGIGRF
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR

Arabidopsis Description

F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.