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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400039670 Potato nucleus 96.28 95.73
CDY26031 Canola cytosol 36.68 84.77
CDY26032 Canola cytosol 36.39 78.88
CDX92828 Canola nucleus 57.02 66.33
CDY29836 Canola nucleus 56.73 66.0
Bra019052.1-P Field mustard nucleus 56.45 65.67
Bra026353.1-P Field mustard nucleus 55.59 64.67
CDX89253 Canola nucleus 55.59 64.67
CDX82432 Canola nucleus 45.56 64.37
CDY29303 Canola nucleus 54.73 63.67
AT4G27410.3 Thale cress nucleus 56.45 62.74
Solyc07g063410.2.1 Tomato nucleus 63.9 62.64
AT3G15500.1 Thale cress nucleus 53.3 58.68
Bra001596.1-P Field mustard nucleus 49.28 58.31
CDX75833 Canola nucleus 49.57 58.25
AT1G52890.1 Thale cress nucleus 52.44 57.73
CDY20109 Canola nucleus 51.58 56.78
CDY21844 Canola nucleus 51.58 56.78
Bra021113.1-P Field mustard nucleus 51.58 56.78
CDX98560 Canola nucleus 50.72 55.31
CDX97674 Canola nucleus 50.43 54.83
Bra027238.1-P Field mustard nucleus 51.0 53.45
Bra018998.1-P Field mustard nucleus 51.0 46.48
Solyc04g005610.2.1 Tomato nucleus 34.1 43.27
Solyc11g017470.1.1 Tomato nucleus 35.24 42.27
Solyc06g060230.2.1 Tomato nucleus 35.82 42.23
Solyc05g007770.2.1 Tomato nucleus 34.1 42.2
Solyc04g009440.2.1 Tomato nucleus 33.81 39.2
Solyc07g063420.2.1 Tomato nucleus 35.82 37.99
Solyc10g006880.2.1 Tomato nucleus 38.11 37.46
Solyc10g083450.1.1 Tomato cytosol 28.37 34.26
Solyc11g065540.1.1 Tomato nucleus 28.37 32.04
Solyc02g061780.2.1 Tomato nucleus 21.78 31.15
Solyc02g069960.2.1 Tomato nucleus 26.93 30.32
Solyc10g055760.1.1 Tomato cytosol 23.78 29.33
Solyc05g021090.2.1 Tomato nucleus 22.06 27.6
Solyc07g045030.2.1 Tomato nucleus 26.07 27.49
Solyc01g102740.2.1 Tomato nucleus 29.8 25.18
Solyc05g007550.1.1 Tomato nucleus 27.22 24.36
Solyc02g087920.2.1 Tomato nucleus 26.36 24.02
Solyc07g006840.1.1 Tomato nucleus 28.37 20.5
Protein Annotations
MapMan:15.5.17Gene3D:3.30.310.150EMBL:AF011555GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR003441InterPro:IPR036093InterPro:NAC-domInterPro:NAC_dom_sfPFAM:PF02365PFscan:PS51005
PANTHER:PTHR44908UniProt:Q9SQL0SUPFAM:SSF101941EnsemblPlantsGene:Solyc12g013620.1EnsemblPlants:Solyc12g013620.1.1UniParc:UPI000009FCE4
SEG:seg:::::
Description
Jasmonic acid 2 [Source:UniProtKB/TrEMBL;Acc:Q9SQL0]
Coordinates
chr12:-:4462011..4464637
Molecular Weight (calculated)
39477.3 Da
IEP (calculated)
8.687
GRAVY (calculated)
-0.729
Length
349 amino acids
Sequence
(BLAST)
001: MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHD FPLQIIGEID LYKFDPWVLP SKATFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKVITSQGRK VGIKKALVFY VGKAPKGSKT NWIMHEYRLF ESSRKNNGSS KLDEWVLCRI YKKNSSGPKP LMSGLHSSNE YSHGSSTSSS SQFDDMLESL
201: PEMDDRFSNL PRLNSLKAEK FNLDRLDSAN FDWAILAGLK PMPELGPANQ APGVQGQAQG HVNNHIHSDN NNMNFLNDVY AHPPNFRGNT KVESINLDEE
301: VESGKRNQRI DQSSYFQQSL NGFSQAYTNN VDQFGIQCPN QTLNLGFKQ
Best Arabidopsis Sequence Match ( AT4G27410.2 )
(BLAST)
001: MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIITADGRR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA VTPVQACREE HSTNGSSSSS SSQLDDVLDS
201: FPEIKDQSFN LPRMNSLRTI LNGNFDWASL AGLNPIPELA PTNGLPSYGG YDAFRAAEGE AESGHVNRQQ NSSGLTQSFG YSSSGFGVSG QTFEFRQ
Arabidopsis Description
RD26NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JIU9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.