Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82432 | Canola | nucleus | 81.14 | 97.57 |
| CDY26031 | Canola | cytosol | 45.79 | 90.07 |
| CDY26032 | Canola | cytosol | 45.45 | 83.85 |
| CDX98560 | Canola | nucleus | 83.17 | 77.19 |
| CDX97674 | Canola | nucleus | 83.17 | 76.95 |
| AT3G15500.1 | Thale cress | nucleus | 81.82 | 76.66 |
| CDY20109 | Canola | nucleus | 80.81 | 75.71 |
| CDY21844 | Canola | nucleus | 80.13 | 75.08 |
| CDY29303 | Canola | nucleus | 57.24 | 56.67 |
| CDY29836 | Canola | nucleus | 57.24 | 56.67 |
| CDX92828 | Canola | nucleus | 56.9 | 56.33 |
| CDX89253 | Canola | nucleus | 56.23 | 55.67 |
| CDX82430 | Canola | nucleus | 37.04 | 55.28 |
| CDY22671 | Canola | nucleus | 36.7 | 54.77 |
| VIT_19s0014g03290.t01 | Wine grape | nucleus | 59.26 | 52.85 |
| KRH22137 | Soybean | nucleus | 60.94 | 52.77 |
| KRH27201 | Soybean | nucleus | 60.27 | 51.88 |
| Solyc12g013620.1.1 | Tomato | nucleus | 58.25 | 49.57 |
| PGSC0003DMT400039670 | Potato | nucleus | 58.25 | 49.29 |
| CDY41537 | Canola | nucleus | 37.04 | 44.0 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 37.71 | 43.41 |
| CDX84443 | Canola | nucleus | 36.7 | 43.25 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 37.71 | 42.75 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 36.7 | 41.92 |
| CDY40894 | Canola | nucleus | 36.7 | 41.92 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 36.7 | 41.6 |
| CDY31350 | Canola | nucleus | 36.7 | 41.13 |
| CDX90054 | Canola | nucleus | 39.06 | 40.7 |
| CDX81120 | Canola | nucleus | 33.0 | 40.66 |
| CDX69919 | Canola | nucleus | 38.05 | 40.65 |
| CDY21567 | Canola | nucleus | 37.71 | 40.29 |
| CDY15158 | Canola | nucleus | 38.72 | 40.21 |
| CDY40930 | Canola | cytosol | 35.69 | 39.26 |
| CDX95931 | Canola | cytosol | 35.69 | 39.26 |
| CDY07348 | Canola | nucleus | 35.02 | 38.38 |
| CDY51500 | Canola | nucleus | 35.02 | 38.24 |
| CDY42902 | Canola | nucleus | 36.03 | 38.21 |
| CDY12886 | Canola | nucleus | 41.08 | 38.01 |
| CDY40970 | Canola | nucleus | 41.08 | 37.89 |
| CDY39846 | Canola | mitochondrion | 36.7 | 37.07 |
| CDY69545 | Canola | nucleus | 38.38 | 36.54 |
| CDY56427 | Canola | nucleus | 39.73 | 36.09 |
| CDY53806 | Canola | nucleus | 38.38 | 35.85 |
| CDX84050 | Canola | nucleus | 22.9 | 35.23 |
| CDY50880 | Canola | nucleus | 38.05 | 34.77 |
| CDX97675 | Canola | nucleus | 40.07 | 34.69 |
| CDY20131 | Canola | nucleus | 40.07 | 34.0 |
| CDX98562 | Canola | nucleus | 39.73 | 32.87 |
| CDY29983 | Canola | nucleus | 38.38 | 32.11 |
| CDY14865 | Canola | nucleus | 29.63 | 31.77 |
| CDY30373 | Canola | nucleus | 29.29 | 31.41 |
| CDY53654 | Canola | nucleus | 28.28 | 30.11 |
| CDY55499 | Canola | nucleus | 28.28 | 30.11 |
| CDY26794 | Canola | nucleus | 25.93 | 27.6 |
| CDY47485 | Canola | nucleus | 25.93 | 27.6 |
| CDY47486 | Canola | nucleus | 25.93 | 27.6 |
| CDY64562 | Canola | nucleus | 26.6 | 26.87 |
| CDY43391 | Canola | nucleus | 26.26 | 26.44 |
| CDY39487 | Canola | nucleus | 24.92 | 26.33 |
| CDX67438 | Canola | nucleus | 29.63 | 26.27 |
| CDY24238 | Canola | nucleus | 26.94 | 26.06 |
| CDY02222 | Canola | nucleus | 24.58 | 25.98 |
| CDX82569 | Canola | nucleus | 26.26 | 25.83 |
| CDY11662 | Canola | nucleus | 28.96 | 25.67 |
| CDX71329 | Canola | endoplasmic reticulum, extracellular | 25.93 | 25.08 |
| CDY60122 | Canola | nucleus | 27.61 | 25.08 |
| CDY31385 | Canola | cytosol | 25.93 | 24.14 |
| CDY65270 | Canola | nucleus | 31.99 | 24.05 |
| CDY46433 | Canola | nucleus | 31.65 | 22.82 |
| CDY17437 | Canola | nucleus | 30.64 | 22.41 |
| CDY15835 | Canola | nucleus | 30.3 | 22.11 |
| CDY04129 | Canola | nucleus | 30.3 | 22.06 |
| CDY09368 | Canola | nucleus | 29.97 | 21.92 |
| CDY01755 | Canola | nucleus | 29.29 | 21.91 |
| CDX95910 | Canola | nucleus | 29.97 | 21.76 |
| CDY03050 | Canola | nucleus | 30.3 | 21.74 |
| CDY23551 | Canola | nucleus | 27.27 | 21.6 |
| CDY17595 | Canola | nucleus | 30.3 | 21.58 |
| CDX83510 | Canola | nucleus | 28.96 | 16.86 |
| CDY42810 | Canola | nucleus | 28.96 | 16.86 |
| CDY54324 | Canola | extracellular | 6.06 | 6.5 |
| CDY16201 | Canola | plastid | 5.05 | 5.7 |
| CDX82429 | Canola | plastid | 2.02 | 5.61 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078CL88 | EnsemblPlants:CDX75833 | ProteinID:CDX75833 | ProteinID:CDX75833.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00123793001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR44908 |
| SUPFAM:SSF101941 | UniParc:UPI0004EDDD4F | SEG:seg | : | : | : |
Description
BnaC03g39160D
Coordinates
chrLK031805:+:978353..979427
Molecular Weight (calculated)
33718.3 Da
IEP (calculated)
8.404
GRAVY (calculated)
-0.754
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIQERDPLT QLSLPPGFRF YPTDEELMVE YLCRKAAGHD FSLQLIAEID LYKFDAWVLP SKALFGEKDW YFFSPRDRKY PNGSRPNRCA GSGYWKATGT
101: DKAISTEGRR VGVKKALVFY VGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQSSAQKDD YNSNLMTREY SHNGSSTSYS SHQYDDVFED
201: KTGFLNLARE PSFDWVNSTG HNSVPELGLR HNVPSLRYGD LGGYLHTSGE GNKTHEQAEV IPRFNNSGML SYDQGSSVDP VNGFGHSGQQ PSRFGFM
101: DKAISTEGRR VGVKKALVFY VGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQSSAQKDD YNSNLMTREY SHNGSSTSYS SHQYDDVFED
201: KTGFLNLARE PSFDWVNSTG HNSVPELGLR HNVPSLRYGD LGGYLHTSGE GNKTHEQAEV IPRFNNSGML SYDQGSSVDP VNGFGHSGQQ PSRFGFM
001: MGLQELDPLA QLSLPPGFRF YPTDEELMVE YLCRKAAGHD FSLQLIAEID LYKFDPWVLP SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKVISTEGRR VGIKKALVFY IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQTSAQKQA YNNLMTSGRE YSNNGSSTSS SSHQYDDVLE
201: SLHEIDNRSL GFAAGSSNAL PHSHRPVLTN HKTGFQGLAR EPSFDWANLI GQNSVPELGL SHNVPSIRYG DGGTQQQTEG IPRFNNNSDV SANQGFSVDP
301: VNGFGYSGQQ SSGFGFI
101: DKVISTEGRR VGIKKALVFY IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQTSAQKQA YNNLMTSGRE YSNNGSSTSS SSHQYDDVLE
201: SLHEIDNRSL GFAAGSSNAL PHSHRPVLTN HKTGFQGLAR EPSFDWANLI GQNSVPELGL SHNVPSIRYG DGGTQQQTEG IPRFNNNSDV SANQGFSVDP
301: VNGFGYSGQQ SSGFGFI
Arabidopsis Description
NAC055NAC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VLD3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.