Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83510 | Canola | nucleus | 96.47 | 96.47 |
| CDY30373 | Canola | nucleus | 47.06 | 86.64 |
| CDY14865 | Canola | nucleus | 46.67 | 85.92 |
| CDY53654 | Canola | nucleus | 46.47 | 84.95 |
| CDY55499 | Canola | nucleus | 46.27 | 84.59 |
| AT2G43000.1 | Thale cress | nucleus | 45.49 | 84.36 |
| CDY26031 | Canola | cytosol | 14.9 | 50.33 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 24.31 | 49.6 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 25.29 | 49.24 |
| GSMUA_Achr10P... | Banana | cytosol | 25.29 | 48.31 |
| CDY26032 | Canola | cytosol | 14.9 | 47.2 |
| KRH73618 | Soybean | cytosol | 29.61 | 47.19 |
| GSMUA_Achr4P32010_001 | Banana | nucleus | 26.27 | 46.69 |
| CDY43391 | Canola | nucleus | 26.86 | 46.44 |
| KRH14512 | Soybean | nucleus | 29.61 | 46.32 |
| CDY24238 | Canola | nucleus | 27.45 | 45.6 |
| Zm00001d007850_P001 | Maize | nucleus | 22.16 | 45.02 |
| GSMUA_Achr9P10040_001 | Banana | nucleus | 26.67 | 44.74 |
| CDY64562 | Canola | nucleus | 25.69 | 44.56 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 26.47 | 43.97 |
| CDX82569 | Canola | nucleus | 25.69 | 43.38 |
| Solyc07g045030.2.1 | Tomato | nucleus | 27.65 | 42.6 |
| CDX82430 | Canola | nucleus | 16.08 | 41.21 |
| CDY60122 | Canola | nucleus | 26.08 | 40.67 |
| PGSC0003DMT400049124 | Potato | nucleus | 19.8 | 40.4 |
| CDY22671 | Canola | nucleus | 15.69 | 40.2 |
| EES17466 | Sorghum | nucleus | 22.94 | 38.49 |
| Zm00001d013151_P001 | Maize | cytosol | 25.1 | 38.1 |
| HORVU5Hr1G099470.2 | Barley | cytosol | 24.9 | 37.69 |
| Zm00001d031164_P001 | Maize | nucleus | 22.55 | 37.58 |
| TraesCS5A01G411900.1 | Wheat | nucleus | 25.1 | 37.32 |
| EER95852 | Sorghum | nucleus | 24.9 | 37.03 |
| TraesCS5D01G421100.1 | Wheat | nucleus | 24.71 | 36.95 |
| TraesCS5B01G415700.1 | Wheat | nucleus | 25.1 | 36.57 |
| TraesCS4B01G384700.1 | Wheat | cytoskeleton, cytosol, nucleus | 24.12 | 36.18 |
| HORVU5Hr1G099390.2 | Barley | nucleus | 20.39 | 35.99 |
| EER93360 | Sorghum | nucleus | 26.08 | 35.95 |
| TraesCS5B01G415600.1 | Wheat | nucleus | 24.71 | 35.9 |
| Zm00001d018773_P001 | Maize | nucleus | 25.1 | 35.75 |
| Os03t0777000-01 | Rice | nucleus | 25.29 | 35.64 |
| TraesCS5D01G420800.1 | Wheat | nucleus | 25.29 | 35.44 |
| TraesCS5A01G411800.1 | Wheat | nucleus | 24.31 | 35.23 |
| CDY23551 | Canola | nucleus | 25.88 | 35.2 |
| HORVU5Hr1G099460.1 | Barley | nucleus | 23.73 | 34.97 |
| Zm00001d034277_P001 | Maize | cytosol, mitochondrion, nucleus | 25.1 | 34.78 |
| TraesCS5A01G411700.1 | Wheat | nucleus | 25.49 | 34.48 |
| TraesCS5B01G415400.1 | Wheat | nucleus | 25.29 | 34.22 |
| TraesCS5D01G421000.1 | Wheat | nucleus | 24.9 | 33.07 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 16.67 | 32.95 |
| CDY41537 | Canola | nucleus | 16.08 | 32.8 |
| CDX82432 | Canola | nucleus | 15.88 | 32.79 |
| CDX84443 | Canola | nucleus | 16.08 | 32.54 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 16.67 | 32.44 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 16.27 | 31.68 |
| CDX89253 | Canola | nucleus | 18.63 | 31.67 |
| CDX92828 | Canola | nucleus | 18.63 | 31.67 |
| CDY29836 | Canola | nucleus | 18.63 | 31.67 |
| CDY40894 | Canola | nucleus | 16.08 | 31.54 |
| CDX67438 | Canola | nucleus | 20.59 | 31.34 |
| CDY11662 | Canola | nucleus | 20.59 | 31.34 |
| CDY29303 | Canola | nucleus | 18.43 | 31.33 |
| CDY31350 | Canola | nucleus | 16.27 | 31.32 |
| CDX90054 | Canola | nucleus | 17.45 | 31.23 |
| CDX95931 | Canola | cytosol | 16.47 | 31.11 |
| CDY40930 | Canola | cytosol | 16.47 | 31.11 |
| CDY07348 | Canola | nucleus | 16.47 | 31.0 |
| CDY51500 | Canola | nucleus | 16.47 | 30.88 |
| CDY15158 | Canola | nucleus | 17.25 | 30.77 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 15.69 | 30.77 |
| CDY42902 | Canola | nucleus | 16.86 | 30.71 |
| CDX69919 | Canola | nucleus | 16.67 | 30.58 |
| CDY21567 | Canola | nucleus | 16.67 | 30.58 |
| CDY26794 | Canola | nucleus | 16.47 | 30.11 |
| CDY47486 | Canola | nucleus | 16.47 | 30.11 |
| CDY47485 | Canola | nucleus | 16.27 | 29.75 |
| CDY39487 | Canola | nucleus | 16.27 | 29.54 |
| CDX81120 | Canola | nucleus | 13.92 | 29.46 |
| CDY02222 | Canola | nucleus | 16.08 | 29.18 |
| CDX75833 | Canola | nucleus | 16.86 | 28.96 |
| CDX71329 | Canola | endoplasmic reticulum, extracellular | 17.25 | 28.66 |
| CDY69545 | Canola | nucleus | 17.45 | 28.53 |
| CDY53806 | Canola | nucleus | 17.45 | 27.99 |
| CDY39846 | Canola | mitochondrion | 16.08 | 27.89 |
| CDY21844 | Canola | nucleus | 17.25 | 27.76 |
| CDY31385 | Canola | cytosol | 17.25 | 27.59 |
| CDX98560 | Canola | nucleus | 17.25 | 27.5 |
| CDY20109 | Canola | nucleus | 17.06 | 27.44 |
| CDX97674 | Canola | nucleus | 17.25 | 27.41 |
| CDY65270 | Canola | nucleus | 21.18 | 27.34 |
| CDY12886 | Canola | nucleus | 17.06 | 27.1 |
| CDY40970 | Canola | nucleus | 17.06 | 27.02 |
| CDY50880 | Canola | nucleus | 16.86 | 26.46 |
| CDY56427 | Canola | nucleus | 16.86 | 26.3 |
| CDY01755 | Canola | nucleus | 20.39 | 26.2 |
| CDY46433 | Canola | nucleus | 20.78 | 25.73 |
| CDX95910 | Canola | nucleus | 20.59 | 25.67 |
| CDY20131 | Canola | nucleus | 17.25 | 25.14 |
| CDX97675 | Canola | nucleus | 16.86 | 25.07 |
| CDY29983 | Canola | nucleus | 17.25 | 24.79 |
| CDX98562 | Canola | nucleus | 16.67 | 23.68 |
| CDX84050 | Canola | nucleus | 8.82 | 23.32 |
| CDY17437 | Canola | nucleus | 17.65 | 22.17 |
| CDY04129 | Canola | nucleus | 17.65 | 22.06 |
| CDY03050 | Canola | nucleus | 17.84 | 21.98 |
| CDY17595 | Canola | nucleus | 17.84 | 21.82 |
| CDY09368 | Canola | nucleus | 17.25 | 21.67 |
| CDY15835 | Canola | nucleus | 17.25 | 21.62 |
| CDY54324 | Canola | extracellular | 4.71 | 8.66 |
| CDY16201 | Canola | plastid | 3.73 | 7.22 |
| CDX82429 | Canola | plastid | 0.78 | 3.74 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.1330.80 | Gene3D:3.30.310.150 | GO:A0A078HWF7 | UniProt:A0A078HWF7 | EnsemblPlants:CDY42810 |
| ProteinID:CDY42810 | ProteinID:CDY42810.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00075489001 |
| InterPro:IPR003441 | InterPro:IPR005175 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 |
| PFAM:PF03479 | InterPro:PPC_dom | PFscan:PS51005 | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF17 |
| SUPFAM:SSF101941 | SUPFAM:SSF117856 | TMHMM:TMhelix | UniParc:UPI0004EE26D1 | SEG:seg | : |
Description
BnaC03g23960DBnaC03g23960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWF7]
Coordinates
chrLK032535:+:108137..111602
Molecular Weight (calculated)
56554.2 Da
IEP (calculated)
9.021
GRAVY (calculated)
-0.484
Length
510 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCEGKDHEE EDEAILPGFR FHPTDEELLG YYLRRKVENK PIKLELIKQI DIYKFDPWDL PRVSSVGEKE WYFFCMRGRK YKNSVRPNRV TGSGFWKATG
101: IDKPVYSNFN CIGLKKSLVY YLGSAGKGSK TDWMMHEFRL PSTTKTDSTA QQAEVWTLCR IFKRVTHHRN PTIIQQNRKP VITLTDSCSK TSSLDSDHTS
201: HRVVDSLPPK LHEPQTQNPY WNQLPTLGFN QPTFTCHDNN FLSFLNINGE DFIGDSASWD ELRSKSLLPL RNHEAAERAN NNNNNSLKAL PKAVQPVSSI
301: EGGMVKRPRG RPAGSKNKPK PPIIVTHDSP NSLRAHAVEI SSGNDICEAL SDFSRRKQRG LCILSANGCV TNVTLRQPAS SGAIVTLHGR FEILSLLGSI
401: LPPPAPLGIT GLTIYLAGHQ GQVVGGGVVG GLIASGPVVI MAASFMNAVF DRLPLDDDES ASMQNQQYYQ NGRSRPLDDI HGLPQNLLTN GNSGSDVFSW
501: GAAQRAMSKP
101: IDKPVYSNFN CIGLKKSLVY YLGSAGKGSK TDWMMHEFRL PSTTKTDSTA QQAEVWTLCR IFKRVTHHRN PTIIQQNRKP VITLTDSCSK TSSLDSDHTS
201: HRVVDSLPPK LHEPQTQNPY WNQLPTLGFN QPTFTCHDNN FLSFLNINGE DFIGDSASWD ELRSKSLLPL RNHEAAERAN NNNNNSLKAL PKAVQPVSSI
301: EGGMVKRPRG RPAGSKNKPK PPIIVTHDSP NSLRAHAVEI SSGNDICEAL SDFSRRKQRG LCILSANGCV TNVTLRQPAS SGAIVTLHGR FEILSLLGSI
401: LPPPAPLGIT GLTIYLAGHQ GQVVGGGVVG GLIASGPVVI MAASFMNAVF DRLPLDDDES ASMQNQQYYQ NGRSRPLDDI HGLPQNLLTN GNSGSDVFSW
501: GAAQRAMSKP
001: MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP
Arabidopsis Description
AHL16AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VQG3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.