Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G415600.1 | Wheat | nucleus | 87.14 | 86.89 |
| TraesCS4B01G384700.1 | Wheat | cytoskeleton, cytosol, nucleus | 80.57 | 82.94 |
| TraesCS5B01G415400.1 | Wheat | nucleus | 85.71 | 79.58 |
| Os03t0777000-01 | Rice | nucleus | 68.29 | 66.02 |
| Zm00001d007850_P001 | Maize | nucleus | 42.57 | 59.36 |
| EER95852 | Sorghum | nucleus | 54.86 | 55.98 |
| Zm00001d018773_P001 | Maize | nucleus | 53.43 | 52.23 |
| VIT_19s0027g00880.t01 | Wine grape | nucleus | 31.71 | 51.87 |
| VIT_12s0028g00860.t01 | Wine grape | nucleus | 44.0 | 51.68 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 38.57 | 51.53 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 36.29 | 50.8 |
| VIT_19s0027g00870.t01 | Wine grape | nucleus | 40.0 | 50.54 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 44.0 | 50.16 |
| VIT_19s0027g00860.t01 | Wine grape | nucleus | 38.86 | 49.28 |
| VIT_19s0027g00840.t01 | Wine grape | nucleus | 38.57 | 47.54 |
| KRH73618 | Soybean | cytosol | 43.43 | 47.5 |
| PGSC0003DMT400090327 | Potato | cytosol | 38.29 | 47.18 |
| Bra000282.1-P | Field mustard | nucleus | 36.57 | 47.06 |
| KRH14512 | Soybean | nucleus | 43.71 | 46.93 |
| AT2G43000.1 | Thale cress | nucleus | 36.86 | 46.91 |
| Solyc05g021090.2.1 | Tomato | nucleus | 36.86 | 46.24 |
| VIT_19s0027g00910.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 38.86 | 46.1 |
| Bra004736.1-P | Field mustard | nucleus | 36.86 | 46.07 |
| KRG98971 | Soybean | nucleus | 40.0 | 46.05 |
| KRH46012 | Soybean | nucleus | 40.0 | 46.05 |
| CDY55499 | Canola | nucleus | 36.57 | 45.88 |
| CDY53654 | Canola | nucleus | 36.57 | 45.88 |
| PGSC0003DMT400054407 | Potato | nucleus | 41.14 | 45.86 |
| AT3G12910.1 | Thale cress | nucleus | 39.43 | 45.54 |
| Bra037743.1-P | Field mustard | nucleus | 36.0 | 45.49 |
| CDY30373 | Canola | nucleus | 36.0 | 45.49 |
| Solyc02g069960.2.1 | Tomato | nucleus | 40.29 | 45.48 |
| CDY43391 | Canola | nucleus | 38.0 | 45.08 |
| PGSC0003DMT400003082 | Potato | nucleus | 36.29 | 45.04 |
| CDY24238 | Canola | nucleus | 39.14 | 44.63 |
| CDY14865 | Canola | nucleus | 35.14 | 44.4 |
| CDX82569 | Canola | nucleus | 38.29 | 44.37 |
| Bra039353.1-P | Field mustard | nucleus | 38.86 | 44.3 |
| CDY64562 | Canola | nucleus | 37.14 | 44.22 |
| KRH13702 | Soybean | nucleus | 39.43 | 43.4 |
| CDY60122 | Canola | nucleus | 39.71 | 42.51 |
| Solyc07g045030.2.1 | Tomato | nucleus | 40.0 | 42.3 |
| Bra034719.1-P | Field mustard | nucleus | 39.43 | 42.2 |
| PGSC0003DMT400049124 | Potato | nucleus | 29.43 | 41.2 |
| CDY23551 | Canola | nucleus | 39.14 | 36.53 |
| TraesCS2B01G076000.1 | Wheat | nucleus | 31.71 | 33.04 |
| TraesCS2B01G076100.1 | Wheat | nucleus | 32.29 | 32.1 |
| TraesCS5B01G338700.1 | Wheat | nucleus | 34.57 | 31.76 |
| TraesCS5B01G338400.1 | Wheat | nucleus | 34.57 | 31.76 |
| TraesCS6B01G335700.1 | Wheat | nucleus | 34.0 | 30.59 |
| TraesCS3B01G439600.1 | Wheat | nucleus | 25.71 | 30.2 |
| TraesCS6B01G075200.1 | Wheat | nucleus | 24.29 | 29.82 |
| TraesCS2B01G075900.1 | Wheat | nucleus | 32.86 | 29.72 |
| TraesCS5B01G226800.1 | Wheat | nucleus | 33.14 | 29.44 |
| TraesCS7B01G472200.1 | Wheat | cytosol, nucleus, plastid | 23.71 | 27.95 |
| TraesCS3B01G371200.1 | Wheat | nucleus | 24.57 | 27.56 |
| TraesCS7B01G472600.1 | Wheat | cytosol, nucleus, plastid | 23.43 | 27.33 |
| TraesCS1B01G274300.1 | Wheat | nucleus | 23.43 | 27.24 |
| TraesCS4B01G173600.1 | Wheat | nucleus | 26.86 | 27.17 |
| TraesCS5B01G480900.2 | Wheat | nucleus | 24.57 | 26.3 |
| TraesCS4B01G328800.1 | Wheat | nucleus | 25.71 | 25.94 |
| TraesCS4B01G328700.1 | Wheat | nucleus | 26.0 | 25.78 |
| TraesCS2B01G119000.1 | Wheat | nucleus | 25.71 | 25.71 |
| TraesCS4B01G328600.1 | Wheat | nucleus | 25.71 | 25.64 |
| TraesCS4B01G328900.1 | Wheat | nucleus | 25.71 | 25.57 |
| TraesCS3B01G194000.1 | Wheat | nucleus | 22.29 | 25.32 |
| TraesCS4B01G098200.1 | Wheat | nucleus | 24.0 | 25.15 |
| CDY42810 | Canola | nucleus | 36.57 | 25.1 |
| TraesCS2B01G119100.1 | Wheat | nucleus | 25.43 | 25.0 |
| TraesCS3B01G093300.1 | Wheat | nucleus | 25.14 | 24.93 |
| CDX83510 | Canola | nucleus | 36.29 | 24.9 |
| TraesCS4B01G329100.1 | Wheat | nucleus | 24.57 | 24.43 |
| TraesCS5B01G142100.1 | Wheat | nucleus | 24.57 | 24.29 |
| TraesCS1B01G272600.1 | Wheat | nucleus | 26.86 | 24.29 |
| TraesCS7B01G219400.1 | Wheat | nucleus | 25.43 | 22.88 |
| TraesCS3B01G436900.1 | Wheat | nucleus | 26.57 | 22.57 |
| TraesCS2B01G228900.1 | Wheat | nucleus | 25.43 | 21.92 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR44543 | PANTHER:PTHR44543:SF3 | SUPFAM:SSF101941 | EnsemblPlantsGene:TraesCS5B01G415700 | EnsemblPlants:TraesCS5B01G415700.1 | SEG:seg |
Description
No Description!
Coordinates
chr5B:+:589998354..589999655
Molecular Weight (calculated)
39240.9 Da
IEP (calculated)
6.114
GRAVY (calculated)
-0.612
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAKAEMSAM EMEKAMSDGE VVLGGAGDEE EDVVLPGYRF HPTDEELVTF YLRRKVARKP LRIEVIREMD IYKHDPWDLP KASTVGGEKE WYFFCLRGRK
101: YRNSIRPNRV TGSGFWKATG IDRPIYSAGT GGAGSGVSIG LKKSLVYYRG SAGKGTKTDW MMHEFRLPPA AAAATNSSPS MQEAEVWTIC RIFRRTITYR
201: KQQQPWRPAP APSAADSNSN TGSFESSEAG DEYMNCLQAP SAPCIPQQQQ HQQQYVSQVG TVDSVNFFYE DTVHNQQFQG QWSTAPAPPV PEQKLQSPLS
301: TAVSFHQNDH SHAVAASDFY KVEGYLEEIA RMMEVTDPAG FYDYDYRSYG
101: YRNSIRPNRV TGSGFWKATG IDRPIYSAGT GGAGSGVSIG LKKSLVYYRG SAGKGTKTDW MMHEFRLPPA AAAATNSSPS MQEAEVWTIC RIFRRTITYR
201: KQQQPWRPAP APSAADSNSN TGSFESSEAG DEYMNCLQAP SAPCIPQQQQ HQQQYVSQVG TVDSVNFFYE DTVHNQQFQG QWSTAPAPPV PEQKLQSPLS
301: TAVSFHQNDH SHAVAASDFY KVEGYLEEIA RMMEVTDPAG FYDYDYRSYG
001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
Arabidopsis Description
JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.