Factsheet for VIT_12s0028g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g00840.t01	Wine grape	nucleus	57.05	59.86
VIT_19s0027g00860.t01	Wine grape	nucleus	54.7	59.06
VIT_19s0027g00870.t01	Wine grape	nucleus	54.7	58.84
VIT_19s0027g00880.t01	Wine grape	nucleus	41.28	57.48
GSMUA_Achr10P...	Banana	cytosol	49.66	55.43
GSMUA_Achr4P32010_001	Banana	nucleus	52.35	54.36
Solyc05g021090.2.1	Tomato	nucleus	50.34	53.76
GSMUA_Achr4P23030_001	Banana	nucleus	44.97	53.6
VIT_19s0027g00910.t01	Wine grape	cytoskeleton, cytosol, nucleus	52.68	53.22
PGSC0003DMT400003082	Potato	nucleus	50.34	53.19
GSMUA_Achr5P02170_001	Banana	nucleus	54.36	52.77
GSMUA_Achr7P00860_001	Banana	nucleus	46.31	52.67
GSMUA_Achr9P10040_001	Banana	nucleus	52.01	50.99
Zm00001d007850_P001	Maize	nucleus	41.95	49.8
HORVU5Hr1G099470.2	Barley	cytosol	51.68	45.7
TraesCS5A01G411900.1	Wheat	nucleus	51.34	44.61
Zm00001d013151_P001	Maize	cytosol	50.0	44.35
TraesCS5D01G421100.1	Wheat	nucleus	50.67	44.28
TraesCS5B01G415700.1	Wheat	nucleus	51.68	44.0
Os03t0777000-01	Rice	nucleus	53.02	43.65
EER95852	Sorghum	nucleus	50.0	43.44
EER93360	Sorghum	nucleus	53.02	42.7
TraesCS4B01G384700.1	Wheat	cytoskeleton, cytosol, nucleus	48.66	42.65
TraesCS5B01G415600.1	Wheat	nucleus	50.0	42.45
TraesCS5D01G420800.1	Wheat	nucleus	51.68	42.31
EES17466	Sorghum	nucleus	42.95	42.11
TraesCS5A01G411800.1	Wheat	nucleus	49.66	42.05
HORVU5Hr1G099460.1	Barley	nucleus	48.66	41.91
Zm00001d031164_P001	Maize	nucleus	41.95	40.85
Zm00001d018773_P001	Maize	nucleus	48.99	40.78
TraesCS5B01G415400.1	Wheat	nucleus	51.01	40.32
TraesCS5A01G411700.1	Wheat	nucleus	51.01	40.32
Zm00001d034277_P001	Maize	cytosol, mitochondrion, nucleus	49.66	40.22
HORVU5Hr1G099390.2	Barley	nucleus	38.26	39.45
TraesCS5D01G421000.1	Wheat	nucleus	50.34	39.06
VIT_06s0004g02340.t01	Wine grape	nucleus	21.81	36.11
VIT_14s0108g00860.t01	Wine grape	nucleus	42.28	35.69
VIT_01s0026g02360.t01	Wine grape	nucleus	42.95	31.92
VIT_07s0031g02610.t01	Wine grape	nucleus	30.54	30.95
VIT_04s0008g00150.t01	Wine grape	nucleus	28.19	30.11
VIT_01s0026g02710.t01	Wine grape	nucleus	27.85	29.43
VIT_03s0038g03410.t01	Wine grape	nucleus	27.52	29.39
VIT_18s0001g02300.t01	Wine grape	nucleus	29.19	29.1
VIT_06s0004g00020.t01	Wine grape	nucleus	28.86	28.96
VIT_19s0014g03290.t01	Wine grape	nucleus	30.54	27.33
VIT_00s0375g00040.t01	Wine grape	nucleus	29.53	26.59
VIT_08s0040g02110.t01	Wine grape	nucleus	28.86	25.15
VIT_08s0007g07670.t01	Wine grape	nucleus	28.19	25.07
VIT_19s0014g03300.t01	Wine grape	nucleus	29.53	24.93
VIT_12s0035g02020.t01	Wine grape	nucleus	34.23	22.37
VIT_06s0004g03080.t01	Wine grape	nucleus	26.51	21.94

Protein Annotations

EntrezGene:100259242	wikigene:100259242	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CBI22083	ProteinID:CBI22083.3
UniProt:E0CU17	EMBL:FN595235	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	EntrezGene:LOC100259242	wikigene:LOC100259242	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR44543	PANTHER:PTHR44543:SF2	SUPFAM:SSF101941	TIGR:TC65842	UniParc:UPI00015C9E5E
ArrayExpress:VIT_12s0028g00860	EnsemblPlantsGene:VIT_12s0028g00860	EnsemblPlants:VIT_12s0028g00860.t01	unigene:Vvi.11367	RefSeq:XP_002283251	RefSeq:XP_002283251.1

Description

No Description!

Coordinates

chr12:-:1387184..1390336

Molecular Weight (calculated)

34200.0 Da

IEP (calculated)

8.411

GRAVY (calculated)

-0.782

Length

298 amino acids

Sequence
(BLAST)

001: MEVEKTSTLD NKKDDDEEVV LPGFRFHPTD EELVGFYLRR KVEKKPISLE LIKQVDIYKY DPWDLPRVST NMGDREWYFF CIRGRKYRNS IRPNRVTGSG
101: FWKATGIDKP IYSVEATNEC IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP PGGKGTYFPN AKNVTQEAEV WTLCRIFKRS PTYRKYTPEG KGSISNKQVA
201: TDSSSKTCSL ESDNNDKYLS FENSTTRTKN STVVDSSIDE RSQLVVGQMS SFVSPYSGPY SSFWNPNGND QFFTSGNWDE LRSIVESAID PPHVYDCR

Best Arabidopsis Sequence Match ( AT2G43000.1 )
(BLAST)

001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP

Arabidopsis Description

JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.