Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0057g00690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08790.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g02300.t01 | Wine grape | nucleus | 68.03 | 66.89 |
| Solyc04g009440.2.1 | Tomato | nucleus | 65.99 | 64.45 |
| KRH59618 | Soybean | nucleus | 65.31 | 64.43 |
| KRH53959 | Soybean | nucleus | 64.63 | 64.41 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 56.46 | 64.34 |
| GSMUA_Achr10P... | Banana | nucleus | 55.78 | 64.31 |
| KRH63977 | Soybean | nucleus | 63.61 | 64.26 |
| PGSC0003DMT400082472 | Potato | nucleus | 65.31 | 63.37 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 55.78 | 62.6 |
| Bra038663.1-P | Field mustard | nucleus | 52.72 | 62.0 |
| CDY41537 | Canola | nucleus | 52.72 | 62.0 |
| CDY31350 | Canola | nucleus | 55.78 | 61.89 |
| Bra029201.1-P | Field mustard | cytosol | 55.78 | 61.89 |
| KXG33829 | Sorghum | nucleus | 60.88 | 61.51 |
| Bra028645.1-P | Field mustard | nucleus | 58.16 | 61.51 |
| CDY21567 | Canola | nucleus | 58.16 | 61.51 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 54.76 | 61.45 |
| GSMUA_Achr6P25380_001 | Banana | nucleus | 57.14 | 61.31 |
| CDX84443 | Canola | nucleus | 52.38 | 61.11 |
| Bra009370.1-P | Field mustard | nucleus | 57.48 | 60.79 |
| CDX69919 | Canola | nucleus | 57.48 | 60.79 |
| GSMUA_Achr6P18720_001 | Banana | nucleus | 56.46 | 60.58 |
| AT5G08790.1 | Thale cress | nucleus | 58.16 | 60.42 |
| CDX81120 | Canola | nucleus | 49.32 | 60.17 |
| HORVU1Hr1G063740.1 | Barley | nucleus | 59.86 | 60.07 |
| Os01t0884300-01 | Rice | nucleus | 61.9 | 60.07 |
| Bra006015.1-P | Field mustard | cytosol, nucleus, plastid | 57.14 | 60.0 |
| Zm00001d042609_P001 | Maize | cytosol, mitochondrion, nucleus | 59.86 | 59.66 |
| TraesCS1A01G263700.1 | Wheat | nucleus | 59.18 | 59.39 |
| GSMUA_Achr7P23250_001 | Banana | nucleus | 54.08 | 59.33 |
| TraesCS3A01G406000.1 | Wheat | nucleus | 59.86 | 58.86 |
| TraesCS3D01G401200.1 | Wheat | nucleus | 59.86 | 58.86 |
| TraesCS3B01G439600.1 | Wheat | nucleus | 59.52 | 58.72 |
| TraesCS1D01G263800.1 | Wheat | nucleus | 59.52 | 58.33 |
| TraesCS1B01G274300.1 | Wheat | nucleus | 58.84 | 57.48 |
| GSMUA_Achr6P17720_001 | Banana | nucleus | 54.76 | 55.52 |
| CDY39846 | Canola | mitochondrion | 54.76 | 54.76 |
| Zm00001d038221_P001 | Maize | plastid | 58.5 | 50.74 |
| AT5G63790.2 | Thale cress | cytosol | 55.1 | 50.31 |
| KXG22031 | Sorghum | nucleus | 58.16 | 50.15 |
| GSMUA_Achr3P18990_001 | Banana | plastid | 55.78 | 49.25 |
| Os11t0184900-02 | Rice | nucleus | 53.74 | 48.02 |
| HORVU4Hr1G017430.7 | Barley | nucleus | 54.08 | 47.89 |
| TraesCS4B01G098200.1 | Wheat | nucleus | 54.08 | 47.6 |
| TraesCS4A01G219700.1 | Wheat | nucleus | 54.08 | 47.46 |
| TraesCS4D01G094400.1 | Wheat | nucleus | 53.74 | 47.16 |
| Zm00001d000112_P001 | Maize | nucleus | 55.78 | 45.68 |
| VIT_06s0004g02340.t01 | Wine grape | nucleus | 26.19 | 42.78 |
| VIT_06s0004g00020.t01 | Wine grape | nucleus | 43.2 | 42.76 |
| OQU83033 | Sorghum | nucleus | 54.76 | 41.93 |
| VIT_01s0026g02710.t01 | Wine grape | nucleus | 37.76 | 39.36 |
| VIT_00s0375g00040.t01 | Wine grape | nucleus | 43.54 | 38.67 |
| VIT_19s0027g00880.t01 | Wine grape | nucleus | 27.55 | 37.85 |
| VIT_19s0014g03290.t01 | Wine grape | nucleus | 42.52 | 37.54 |
| VIT_19s0014g03300.t01 | Wine grape | nucleus | 44.56 | 37.11 |
| VIT_08s0007g07670.t01 | Wine grape | nucleus | 37.41 | 32.84 |
| VIT_08s0040g02110.t01 | Wine grape | nucleus | 37.41 | 32.16 |
| VIT_19s0027g00860.t01 | Wine grape | nucleus | 29.93 | 31.88 |
| VIT_19s0027g00870.t01 | Wine grape | nucleus | 29.59 | 31.41 |
| VIT_19s0027g00840.t01 | Wine grape | nucleus | 29.59 | 30.63 |
| VIT_12s0028g00860.t01 | Wine grape | nucleus | 30.95 | 30.54 |
| VIT_03s0038g03410.t01 | Wine grape | nucleus | 28.57 | 30.11 |
| VIT_06s0004g03080.t01 | Wine grape | nucleus | 36.39 | 29.72 |
| VIT_04s0008g00150.t01 | Wine grape | nucleus | 27.89 | 29.39 |
| VIT_19s0027g00910.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 28.91 | 28.81 |
| VIT_14s0108g00860.t01 | Wine grape | nucleus | 31.29 | 26.06 |
| VIT_01s0026g02360.t01 | Wine grape | nucleus | 31.97 | 23.44 |
| VIT_12s0035g02020.t01 | Wine grape | nucleus | 34.01 | 21.93 |
Protein Annotations
| EntrezGene:100261123 | wikigene:100261123 | MapMan:15.5.17 | Gene3D:3.30.310.150 | EMBL:AM480640 | ProteinID:CAN73000 |
| ProteinID:CAN73000.1 | ProteinID:CCB47161 | ProteinID:CCB47161.1 | UniProt:F6H4F0 | EMBL:FN595233 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | EntrezGene:LOC100261123 | wikigene:LOC100261123 |
| InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31719 | PANTHER:PTHR31719:SF16 |
| SUPFAM:SSF101941 | TIGR:TC55407 | UniParc:UPI00015CA285 | ArrayExpress:VIT_07s0031g02610 | EnsemblPlantsGene:VIT_07s0031g02610 | EnsemblPlants:VIT_07s0031g02610.t01 |
| unigene:Vvi.13989 | RefSeq:XP_002274177 | RefSeq:XP_002274177.2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7:+:18930483..18932500
Molecular Weight (calculated)
33472.6 Da
IEP (calculated)
8.847
GRAVY (calculated)
-0.664
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSGDQLQLP AGFRFHPTDE ELVVHYLVRK CASQSISVPI IAEVDLYKYD PWQLPGMALY GEKEWYFFSP RDRKYPNGSR PNRAAGSGYW KATGADKPIG
101: RPKTVGIKKA LVFYAGKAPR GVKTNWIMHE YRLANVDRSA GKKNNLRLDD WVLCRIYNKK GSAEKQHTFD QKSMKYPELE DQKPKIISTV QNKVVPSSLP
201: SLPPMPAPPT TNDYLYFETS DSVPRLHTHT DSSGSEQVMS PEKEVQSEPK WNDFDFSLYM DGFANDPFAS QAQFSGDLLT SSWQDMLMFS NKSF
101: RPKTVGIKKA LVFYAGKAPR GVKTNWIMHE YRLANVDRSA GKKNNLRLDD WVLCRIYNKK GSAEKQHTFD QKSMKYPELE DQKPKIISTV QNKVVPSSLP
201: SLPPMPAPPT TNDYLYFETS DSVPRLHTHT DSSGSEQVMS PEKEVQSEPK WNDFDFSLYM DGFANDPFAS QAQFSGDLLT SSWQDMLMFS NKSF
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.