Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015729 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08790.1 | PGSC0003DMT400015729 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g009440.2.1 | Tomato | nucleus | 96.37 | 97.01 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 56.44 | 66.28 |
| VIT_07s0031g02610.t01 | Wine grape | nucleus | 63.37 | 65.31 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 56.11 | 64.89 |
| KRH63977 | Soybean | nucleus | 61.72 | 64.26 |
| KRH53959 | Soybean | nucleus | 62.38 | 64.07 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 55.12 | 63.74 |
| Bra038663.1-P | Field mustard | nucleus | 52.48 | 63.6 |
| CDY41537 | Canola | nucleus | 52.48 | 63.6 |
| CDX81120 | Canola | nucleus | 50.16 | 63.07 |
| KRH59618 | Soybean | nucleus | 61.72 | 62.75 |
| Bra029201.1-P | Field mustard | cytosol | 54.79 | 62.64 |
| CDY31350 | Canola | nucleus | 54.79 | 62.64 |
| CDY21567 | Canola | nucleus | 57.43 | 62.59 |
| GSMUA_Achr10P... | Banana | nucleus | 52.48 | 62.35 |
| CDX69919 | Canola | nucleus | 57.1 | 62.23 |
| Bra028645.1-P | Field mustard | nucleus | 57.1 | 62.23 |
| Bra009370.1-P | Field mustard | nucleus | 57.1 | 62.23 |
| PGSC0003DMT400023917 | Potato | nucleus | 59.74 | 62.2 |
| CDX84443 | Canola | nucleus | 51.49 | 61.9 |
| Bra006015.1-P | Field mustard | cytosol, nucleus, plastid | 56.44 | 61.07 |
| PGSC0003DMT400045294 | Potato | nucleus | 59.41 | 60.81 |
| AT5G08790.1 | Thale cress | nucleus | 56.44 | 60.42 |
| KXG33829 | Sorghum | nucleus | 57.76 | 60.14 |
| GSMUA_Achr6P18720_001 | Banana | nucleus | 53.47 | 59.12 |
| HORVU1Hr1G063740.1 | Barley | nucleus | 56.44 | 58.36 |
| TraesCS3B01G439600.1 | Wheat | nucleus | 57.1 | 58.05 |
| TraesCS1A01G263700.1 | Wheat | nucleus | 56.11 | 58.02 |
| Zm00001d042609_P001 | Maize | cytosol, mitochondrion, nucleus | 56.44 | 57.97 |
| GSMUA_Achr7P23250_001 | Banana | nucleus | 51.16 | 57.84 |
| TraesCS3D01G401200.1 | Wheat | nucleus | 56.77 | 57.53 |
| TraesCS3A01G406000.1 | Wheat | nucleus | 56.77 | 57.53 |
| TraesCS1D01G263800.1 | Wheat | nucleus | 56.44 | 57.0 |
| GSMUA_Achr6P25380_001 | Banana | nucleus | 51.16 | 56.57 |
| TraesCS1B01G274300.1 | Wheat | nucleus | 55.78 | 56.15 |
| Os01t0884300-01 | Rice | nucleus | 56.11 | 56.11 |
| CDY39846 | Canola | mitochondrion | 53.8 | 55.44 |
| GSMUA_Achr6P17720_001 | Banana | nucleus | 50.49 | 52.76 |
| AT5G63790.2 | Thale cress | cytosol | 55.12 | 51.86 |
| Zm00001d038221_P001 | Maize | plastid | 57.43 | 51.33 |
| KXG22031 | Sorghum | nucleus | 56.44 | 50.15 |
| Os11t0184900-02 | Rice | nucleus | 53.14 | 48.94 |
| HORVU4Hr1G017430.7 | Barley | nucleus | 52.48 | 47.89 |
| TraesCS4B01G098200.1 | Wheat | nucleus | 52.48 | 47.6 |
| TraesCS4A01G219700.1 | Wheat | nucleus | 52.48 | 47.46 |
| TraesCS4D01G094400.1 | Wheat | nucleus | 52.48 | 47.46 |
| GSMUA_Achr3P18990_001 | Banana | plastid | 51.82 | 47.15 |
| Zm00001d000112_P001 | Maize | nucleus | 52.48 | 44.29 |
| OQU83033 | Sorghum | nucleus | 52.15 | 41.15 |
| PGSC0003DMT400007341 | Potato | mitochondrion | 35.97 | 38.52 |
| PGSC0003DMT400047440 | Potato | nucleus | 34.98 | 37.59 |
| PGSC0003DMT400064428 | Potato | nucleus | 39.6 | 34.19 |
| PGSC0003DMT400049665 | Potato | nucleus | 39.93 | 33.99 |
| PGSC0003DMT400049664 | Potato | nucleus | 37.95 | 33.92 |
| PGSC0003DMT400039670 | Potato | nucleus | 38.94 | 33.62 |
| PGSC0003DMT400093822 | Potato | nucleus | 31.35 | 31.99 |
| PGSC0003DMT400022365 | Potato | cytosol | 24.42 | 30.2 |
| PGSC0003DMT400090327 | Potato | cytosol | 27.39 | 29.23 |
| PGSC0003DMT400003082 | Potato | nucleus | 26.73 | 28.72 |
| PGSC0003DMT400028190 | Potato | nucleus | 26.4 | 27.68 |
| PGSC0003DMT400054407 | Potato | nucleus | 28.05 | 27.07 |
| PGSC0003DMT400049124 | Potato | nucleus | 19.47 | 23.6 |
| PGSC0003DMT400080307 | Potato | nucleus | 29.04 | 22.74 |
| PGSC0003DMT400047021 | Potato | nucleus | 29.7 | 22.28 |
| PGSC0003DMT400003343 | Potato | nucleus | 28.71 | 21.97 |
| PGSC0003DMT400048237 | Potato | nucleus | 29.04 | 18.0 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | EMBL:AJ401151 | ProteinID:CAC42087 | ProteinID:CAC42087.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M1D607 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | EnsemblPlantsGene:PGSC0003DMG400032555 | PGSC:PGSC0003DMG400032555 | EnsemblPlants:PGSC0003DMT400082472 | PFscan:PS51005 |
| PANTHER:PTHR31719 | PANTHER:PTHR31719:SF16 | SUPFAM:SSF101941 | UniParc:UPI00029698A9 | SEG:seg | : |
Description
NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400032555]
Coordinates
chr4:+:5045170..5047136
Molecular Weight (calculated)
35073.3 Da
IEP (calculated)
7.907
GRAVY (calculated)
-0.864
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKGATGNQQ LELPAGFRFH PTDDELVQHY LCRKCAGQPI AASIITEIDL YKFDPWQLPE KALYGEKEWY FFSPRDRKYP NGSRPNRAAG TGYWKATGAD
101: KPVGKPKTLG IKKALVFYAG KAPRGIKTNW IMHEYRLANV DRSAGKNNNL RLDDWVLCRI YNKKGTLEKH YNVDNKETAS FGEFDEEIKP KILPTQLAQM
201: PPRPRSTPTP TNDYFHFESS ESMTRMHTTN SSSGSEHVLS PCDKEVQSAP KWDEDHRNTL DFQLNYLDGL LNEPFETQMQ QQICNFDQFN NFQDMFFYMQ
301: KPY
101: KPVGKPKTLG IKKALVFYAG KAPRGIKTNW IMHEYRLANV DRSAGKNNNL RLDDWVLCRI YNKKGTLEKH YNVDNKETAS FGEFDEEIKP KILPTQLAQM
201: PPRPRSTPTP TNDYFHFESS ESMTRMHTTN SSSGSEHVLS PCDKEVQSAP KWDEDHRNTL DFQLNYLDGL LNEPFETQMQ QQICNFDQFN NFQDMFFYMQ
301: KPY
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.