Factsheet for PGSC0003DMT400064428

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006880.2.1	Tomato	nucleus	93.16	92.11
CDX82430	Canola	nucleus	42.17	74.37
CDY22671	Canola	nucleus	41.6	73.37
PGSC0003DMT400049664	Potato	nucleus	63.25	65.49
VIT_19s0014g03300.t01	Wine grape	nucleus	62.11	61.76
CDY56427	Canola	nucleus	53.28	57.19
CDY69545	Canola	nucleus	48.72	54.81
CDY20131	Canola	nucleus	54.42	54.57
CDX97675	Canola	nucleus	52.71	53.94
Bra021114.1-P	Field mustard	nucleus	54.99	53.91
AT3G15510.1	Thale cress	nucleus	55.27	53.3
Bra027237.1-P	Field mustard	nucleus	52.99	52.99
CDY53806	Canola	nucleus	47.58	52.52
Bra001597.1-P	Field mustard	nucleus	52.14	52.29
Bra018997.1-P	Field mustard	nucleus	48.43	51.99
AT1G52880.1	Thale cress	nucleus	46.72	51.25
CDX98562	Canola	nucleus	51.85	50.7
GSMUA_Achr9P19520_001	Banana	nucleus	44.73	48.16
GSMUA_Achr1P08860_001	Banana	nucleus	46.44	45.4
PGSC0003DMT400047440	Potato	nucleus	35.04	43.62
PGSC0003DMT400007341	Potato	mitochondrion	34.76	43.11
PGSC0003DMT400045294	Potato	nucleus	36.18	42.91
TraesCS2D01G214100.1	Wheat	nucleus	47.58	41.85
PGSC0003DMT400023917	Potato	nucleus	34.47	41.58
HORVU2Hr1G039640.2	Barley	nucleus	47.58	41.23
TraesCS2A01G201800.2	Wheat	nucleus	47.58	41.03
TraesCS2B01G228900.1	Wheat	nucleus	47.29	40.89
OQU90111	Sorghum	nucleus	47.86	40.19
Zm00001d021818_P002	Maize	nucleus	47.29	39.62
PGSC0003DMT400049665	Potato	nucleus	40.17	39.61
PGSC0003DMT400082472	Potato	nucleus	34.19	39.6
TraesCS6D01G096300.1	Wheat	nucleus	46.15	39.42
TraesCS6A01G108300.2	Wheat	nucleus	46.44	39.18
Os07t0566500-01	Rice	nucleus	47.29	39.06
HORVU6Hr1G019380.2	Barley	plastid	45.3	38.78
PGSC0003DMT400039670	Potato	nucleus	37.89	37.89
PGSC0003DMT400022365	Potato	cytosol	23.93	34.29
PGSC0003DMT400093822	Potato	nucleus	27.92	33.0
PGSC0003DMT400054407	Potato	nucleus	26.5	29.62
PGSC0003DMT400090327	Potato	cytosol	23.93	29.58
PGSC0003DMT400028190	Potato	nucleus	23.65	28.72
PGSC0003DMT400003082	Potato	nucleus	22.79	28.37
PGSC0003DMT400080307	Potato	nucleus	27.64	25.06
PGSC0003DMT400049124	Potato	nucleus	16.81	23.6
PGSC0003DMT400047021	Potato	nucleus	26.78	23.27
PGSC0003DMT400003343	Potato	nucleus	25.64	22.73
PGSC0003DMT400048237	Potato	nucleus	29.91	21.47

Protein Annotations

EntrezGene:102593641	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	UniProt:M1CCC7	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400025031
PGSC:PGSC0003DMG400025031	EnsemblPlants:PGSC0003DMT400064428	PFscan:PS51005	PANTHER:PTHR45430	PANTHER:PTHR45430:SF1	SUPFAM:SSF101941
UniParc:UPI000294CB5B	RefSeq:XP_006362947.1	SEG:seg	:	:	:

Description

NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025031]

Coordinates

chr10:-:1787604..1790393

Molecular Weight (calculated)

39792.6 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.787

Length

351 amino acids

Sequence
(BLAST)

001: MESTDSSTGT RHQPQLPPGF RFHPTDEELV VHYLKKRVAG APISVDIIAE IDLYKFDPWE LPAKAIFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT
101: GTDKPIFTSG GTQKVGVKKA LVFYGGKPPK GVKTNWIMHE YRVVENKTNN KPPGCDHIVA NKKGSLRLDD WVLCRIYKKN NTQRSIDDLN DMLGSIPQNV
201: PNSILQGVKP SNYGTILLEN ESNMYDGIMN NTNDMINNNN RSIPQFSSKR SMHGGLYWNI DETTTTTEGN HSPNTKRFLV ENNRDDGLNM NNIARITNHE
301: QSSSIANFLS HFPQNTSIQQ EQQEQQVLGS LSDGVVFRQP YNQVTGMNWY S

Best Arabidopsis Sequence Match ( AT3G15510.1 )
(BLAST)

001: MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VVHYLKRKAA SAPLPVAIIA EVDLYKFDPW ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA
101: TGTDKPVLAS DGNQKVGVKK ALVFYSGKPP KGVKSDWIMH EYRLIENKPN NRPPGCDFGN KKNSLRLDDW VLCRIYKKNN ASRHVDNDKD HDMIDYIFRK
201: IPPSLSMAAA STGLHQHHHN VSRSMNFFPG KFSGGGYGIF SDGGNTSIYD GGGMINNIGT DSVDHDNNAD VVGLNHASSS GPMMMANLKR TLPVPYWPVA
301: DEEQDASPSK RFHGVGGGGG DCSNMSSSMM EETPPLMQQQ GGVLGDGLFR TTSYQLPGLN WYSS

Arabidopsis Description

NAC056NAC transcription factor 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.