Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g069960.2.1 | Tomato | nucleus | 90.76 | 91.94 |
| PGSC0003DMT400090327 | Potato | cytosol | 50.0 | 55.28 |
| GSMUA_Achr10P... | Banana | cytosol | 44.59 | 52.43 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 41.72 | 50.0 |
| GSMUA_Achr9P10040_001 | Banana | nucleus | 47.77 | 49.34 |
| GSMUA_Achr4P32010_001 | Banana | nucleus | 44.27 | 48.43 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 38.53 | 48.4 |
| PGSC0003DMT400003082 | Potato | nucleus | 42.68 | 47.52 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 45.54 | 46.58 |
| Zm00001d007850_P001 | Maize | nucleus | 36.62 | 45.82 |
| PGSC0003DMT400049124 | Potato | nucleus | 34.08 | 42.8 |
| HORVU5Hr1G099470.2 | Barley | cytosol | 45.54 | 42.43 |
| TraesCS5A01G411900.1 | Wheat | nucleus | 45.86 | 41.98 |
| TraesCS5D01G421100.1 | Wheat | nucleus | 45.54 | 41.94 |
| TraesCS5B01G415700.1 | Wheat | nucleus | 45.86 | 41.14 |
| EES17466 | Sorghum | nucleus | 39.49 | 40.79 |
| Zm00001d013151_P001 | Maize | cytosol | 43.63 | 40.77 |
| TraesCS4B01G384700.1 | Wheat | cytoskeleton, cytosol, nucleus | 43.95 | 40.59 |
| Zm00001d031164_P001 | Maize | nucleus | 39.49 | 40.52 |
| HORVU5Hr1G099460.1 | Barley | nucleus | 44.59 | 40.46 |
| Os03t0777000-01 | Rice | nucleus | 46.5 | 40.33 |
| TraesCS5B01G415600.1 | Wheat | nucleus | 44.59 | 39.89 |
| HORVU5Hr1G099390.2 | Barley | nucleus | 36.62 | 39.79 |
| EER95852 | Sorghum | nucleus | 42.99 | 39.36 |
| TraesCS5D01G420800.1 | Wheat | nucleus | 45.22 | 39.01 |
| EER93360 | Sorghum | nucleus | 45.54 | 38.65 |
| TraesCS5A01G411800.1 | Wheat | nucleus | 43.31 | 38.64 |
| TraesCS5B01G415400.1 | Wheat | nucleus | 46.18 | 38.46 |
| Zm00001d034277_P001 | Maize | cytosol, mitochondrion, nucleus | 44.9 | 38.32 |
| TraesCS5A01G411700.1 | Wheat | nucleus | 45.54 | 37.93 |
| TraesCS5D01G421000.1 | Wheat | nucleus | 45.86 | 37.5 |
| Zm00001d018773_P001 | Maize | nucleus | 42.68 | 37.43 |
| PGSC0003DMT400022365 | Potato | cytosol | 26.75 | 34.29 |
| PGSC0003DMT400007341 | Potato | mitochondrion | 29.3 | 32.51 |
| PGSC0003DMT400023917 | Potato | nucleus | 29.3 | 31.62 |
| PGSC0003DMT400047440 | Potato | nucleus | 28.34 | 31.56 |
| PGSC0003DMT400003343 | Potato | nucleus | 39.17 | 31.06 |
| PGSC0003DMT400045294 | Potato | nucleus | 28.98 | 30.74 |
| PGSC0003DMT400080307 | Potato | nucleus | 37.58 | 30.49 |
| PGSC0003DMT400082472 | Potato | nucleus | 27.07 | 28.05 |
| PGSC0003DMT400028190 | Potato | nucleus | 25.8 | 28.03 |
| PGSC0003DMT400049664 | Potato | nucleus | 30.25 | 28.02 |
| PGSC0003DMT400039670 | Potato | nucleus | 30.89 | 27.64 |
| PGSC0003DMT400093822 | Potato | nucleus | 26.11 | 27.61 |
| PGSC0003DMT400064428 | Potato | nucleus | 29.62 | 26.5 |
| PGSC0003DMT400049665 | Potato | nucleus | 29.94 | 26.4 |
| PGSC0003DMT400047021 | Potato | nucleus | 31.53 | 24.5 |
| PGSC0003DMT400048237 | Potato | nucleus | 28.34 | 18.2 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 |
| InterPro:IPR036093 | UniProt:M1BW99 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | EnsemblPlantsGene:PGSC0003DMG400021119 |
| PGSC:PGSC0003DMG400021119 | EnsemblPlants:PGSC0003DMT400054407 | PFscan:PS51005 | PANTHER:PTHR44543 | PANTHER:PTHR44543:SF2 | SUPFAM:SSF101941 |
| UniParc:UPI000296D87D | SEG:seg | : | : | : | : |
Description
NAC domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021119]
Coordinates
chr2:-:29072445..29076402
Molecular Weight (calculated)
36208.2 Da
IEP (calculated)
8.276
GRAVY (calculated)
-0.812
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVEKINSIV TNNYYKKDED EDEDEDDVVL PGFRFHPTDE ELVGFYLRKK IEKKTIGLEI IKQIDIYKYD PWDLPKGSNN NGEKEWYFFC KRSRKYKNSL
101: RPNRVTAGSG FWKATGIDRP IYSSGKCIGL KKSLVYYRGS AGKGTKTDWQ MHEFRLPVEN DKSTKHLHAN FTIPQETETW TLCRILKRNV LYKKPIPDWK
201: EVAKKQRNNS VMNKDVLSST ICSNNSIESS SNNSQIYISF STASVVNQNT YTNTVTENKH QFVSQQSSGT SSQSTTVGAA TSNSSTPLDF NEWLEHGNWD
301: ELKSIFEFSF DPLF
101: RPNRVTAGSG FWKATGIDRP IYSSGKCIGL KKSLVYYRGS AGKGTKTDWQ MHEFRLPVEN DKSTKHLHAN FTIPQETETW TLCRILKRNV LYKKPIPDWK
201: EVAKKQRNNS VMNKDVLSST ICSNNSIESS SNNSQIYISF STASVVNQNT YTNTVTENKH QFVSQQSSGT SSQSTTVGAA TSNSSTPLDF NEWLEHGNWD
301: ELKSIFEFSF DPLF
001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
Arabidopsis Description
JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.