Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G411800.1 | Wheat | nucleus | 90.91 | 88.07 |
| TraesCS5D01G421000.1 | Wheat | nucleus | 92.38 | 82.03 |
| TraesCS5D01G420800.1 | Wheat | nucleus | 86.51 | 81.04 |
| Os03t0777000-01 | Rice | nucleus | 68.62 | 64.64 |
| HORVU5Hr1G099390.2 | Barley | nucleus | 54.25 | 64.01 |
| Zm00001d007850_P001 | Maize | nucleus | 43.99 | 59.76 |
| EER95852 | Sorghum | nucleus | 56.89 | 56.56 |
| Zm00001d018773_P001 | Maize | nucleus | 56.01 | 53.35 |
| VIT_19s0027g00880.t01 | Wine grape | nucleus | 32.26 | 51.4 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 39.3 | 51.15 |
| VIT_12s0028g00860.t01 | Wine grape | nucleus | 44.28 | 50.67 |
| VIT_19s0027g00870.t01 | Wine grape | nucleus | 41.06 | 50.54 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 36.66 | 50.0 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 44.87 | 49.84 |
| VIT_19s0027g00860.t01 | Wine grape | nucleus | 39.88 | 49.28 |
| VIT_19s0027g00840.t01 | Wine grape | nucleus | 39.59 | 47.54 |
| KRH73618 | Soybean | cytosol | 43.99 | 46.88 |
| Solyc05g021090.2.1 | Tomato | nucleus | 38.12 | 46.59 |
| AT2G43000.1 | Thale cress | nucleus | 37.54 | 46.55 |
| Bra000282.1-P | Field mustard | nucleus | 36.95 | 46.32 |
| KRH14512 | Soybean | nucleus | 44.28 | 46.32 |
| PGSC0003DMT400090327 | Potato | cytosol | 38.12 | 45.77 |
| PGSC0003DMT400003082 | Potato | nucleus | 37.83 | 45.74 |
| PGSC0003DMT400054407 | Potato | nucleus | 41.94 | 45.54 |
| VIT_19s0027g00910.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 39.3 | 45.42 |
| CDY53654 | Canola | nucleus | 36.95 | 45.16 |
| Solyc02g069960.2.1 | Tomato | nucleus | 41.06 | 45.16 |
| Bra004736.1-P | Field mustard | nucleus | 36.95 | 45.0 |
| CDY55499 | Canola | nucleus | 36.66 | 44.8 |
| KRG98971 | Soybean | nucleus | 39.88 | 44.74 |
| KRH46012 | Soybean | nucleus | 39.88 | 44.74 |
| CDX82569 | Canola | nucleus | 39.59 | 44.7 |
| CDY64562 | Canola | nucleus | 38.42 | 44.56 |
| AT3G12910.1 | Thale cress | nucleus | 39.59 | 44.55 |
| CDY43391 | Canola | nucleus | 38.42 | 44.41 |
| Bra037743.1-P | Field mustard | nucleus | 36.07 | 44.4 |
| CDY30373 | Canola | nucleus | 36.07 | 44.4 |
| Bra039353.1-P | Field mustard | nucleus | 39.59 | 43.97 |
| CDY24238 | Canola | nucleus | 39.59 | 43.97 |
| KRH13702 | Soybean | nucleus | 40.76 | 43.71 |
| CDY14865 | Canola | nucleus | 35.48 | 43.68 |
| CDY60122 | Canola | nucleus | 40.47 | 42.2 |
| Solyc07g045030.2.1 | Tomato | nucleus | 40.76 | 41.99 |
| Bra034719.1-P | Field mustard | nucleus | 40.18 | 41.9 |
| PGSC0003DMT400049124 | Potato | nucleus | 29.91 | 40.8 |
| CDY23551 | Canola | nucleus | 39.88 | 36.27 |
| TraesCS6D01G286300.1 | Wheat | nucleus | 35.78 | 31.28 |
| TraesCS2D01G061600.1 | Wheat | nucleus | 32.26 | 30.56 |
| TraesCS5D01G472600.1 | Wheat | nucleus | 34.02 | 30.45 |
| TraesCS5D01G344100.1 | Wheat | nucleus | 34.02 | 30.45 |
| TraesCS5D01G239600.1 | Wheat | nucleus | 34.02 | 29.44 |
| TraesCS3D01G401200.1 | Wheat | nucleus | 25.81 | 29.43 |
| TraesCS2D01G061500.1 | Wheat | nucleus | 33.14 | 29.2 |
| TraesCS7D01G535300.1 | Wheat | cytosol, nucleus, plastid | 24.34 | 27.85 |
| TraesCS1D01G263800.1 | Wheat | nucleus | 23.46 | 26.67 |
| TraesCS5D01G481200.1 | Wheat | nucleus | 25.22 | 26.46 |
| TraesCS3D01G333100.1 | Wheat | nucleus | 24.34 | 26.27 |
| TraesCS4D01G325700.1 | Wheat | nucleus | 26.69 | 26.22 |
| TraesCS4D01G175700.1 | Wheat | nucleus | 27.27 | 26.05 |
| TraesCS4D01G325800.1 | Wheat | nucleus | 26.1 | 25.14 |
| TraesCS3D01G170000.1 | Wheat | nucleus | 22.58 | 25.0 |
| TraesCS2D01G101400.1 | Wheat | nucleus | 25.81 | 24.79 |
| CDY42810 | Canola | nucleus | 36.95 | 24.71 |
| CDX83510 | Canola | nucleus | 36.66 | 24.51 |
| TraesCS4D01G094400.1 | Wheat | nucleus | 23.75 | 24.18 |
| TraesCS3D01G078900.1 | Wheat | nucleus | 24.93 | 24.08 |
| TraesCS1D01G261800.1 | Wheat | nucleus | 26.98 | 23.65 |
| TraesCS5D01G148800.1 | Wheat | nucleus | 24.34 | 23.45 |
| TraesCS6D01G059300.1 | Wheat | nucleus, plastid | 24.05 | 23.23 |
| TraesCS7D01G315100.1 | Wheat | nucleus | 25.81 | 22.56 |
| TraesCS3D01G398200.1 | Wheat | nucleus | 26.39 | 21.95 |
| TraesCS2D01G214100.1 | Wheat | nucleus | 25.51 | 21.8 |
| TraesCS6D01G096300.1 | Wheat | nucleus | 26.1 | 21.65 |
| TraesCS2D01G101300.1 | Wheat | nucleus | 19.35 | 20.95 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR44543 | PANTHER:PTHR44543:SF3 | SUPFAM:SSF101941 | EnsemblPlantsGene:TraesCS5D01G421100 | EnsemblPlants:TraesCS5D01G421100.1 | SEG:seg |
Description
No Description!
Coordinates
chr5D:+:481425510..481426918
Molecular Weight (calculated)
38262.8 Da
IEP (calculated)
5.941
GRAVY (calculated)
-0.571
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAKAEMSAM ELEKVMSDGE VVLGGAGDEE EEDVVLPGYR FHPTDEELVT FYLRRKVARK SLRIEVIREM DIYKHDPWDL PKASTVGGEK EWYFFCLRGR
101: KYRNSIRPNR VTGSGFWKAT GIDRPIYSAG SGGASSGVSI GLKKSLVYYR GSAGKGTKTD WMMHEFRLPP AAATNSSPSM QEAEVWTICR IFRRTITYRK
201: QQTWRPVPAP SVADSNSNTG SFESSEAGDE YMNCLQAPAA PCIPQQQYVS QVGTVDSGNF FYEDNMHNQQ FQGQWNAAPA APVPEQKLQS PLSTAVSFHQ
301: NDHSHAVAAN DFYKVEGYLE EIARMMEVTD PTGFYDYRSY G
101: KYRNSIRPNR VTGSGFWKAT GIDRPIYSAG SGGASSGVSI GLKKSLVYYR GSAGKGTKTD WMMHEFRLPP AAATNSSPSM QEAEVWTICR IFRRTITYRK
201: QQTWRPVPAP SVADSNSNTG SFESSEAGDE YMNCLQAPAA PCIPQQQYVS QVGTVDSGNF FYEDNMHNQQ FQGQWNAAPA APVPEQKLQS PLSTAVSFHQ
301: NDHSHAVAAN DFYKVEGYLE EIARMMEVTD PTGFYDYRSY G
001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
Arabidopsis Description
JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.