Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55499 | Canola | nucleus | 97.85 | 97.85 |
| Bra004736.1-P | Field mustard | nucleus | 97.49 | 97.14 |
| AT2G43000.1 | Thale cress | nucleus | 85.3 | 86.55 |
| CDY14865 | Canola | nucleus | 84.23 | 84.84 |
| CDY30373 | Canola | nucleus | 84.23 | 84.84 |
| CDY26031 | Canola | cytosol | 26.88 | 49.67 |
| CDY26032 | Canola | cytosol | 27.24 | 47.2 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 44.09 | 46.95 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 41.94 | 46.8 |
| CDX83510 | Canola | nucleus | 85.3 | 46.67 |
| KRH73618 | Soybean | cytosol | 53.41 | 46.56 |
| CDY42810 | Canola | nucleus | 84.95 | 46.47 |
| GSMUA_Achr10P... | Banana | cytosol | 44.44 | 46.44 |
| GSMUA_Achr4P32010_001 | Banana | nucleus | 47.67 | 46.34 |
| KRH14512 | Soybean | nucleus | 53.76 | 46.01 |
| Zm00001d007850_P001 | Maize | nucleus | 41.22 | 45.82 |
| CDY43391 | Canola | nucleus | 46.95 | 44.41 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 48.75 | 44.3 |
| GSMUA_Achr9P10040_001 | Banana | nucleus | 48.03 | 44.08 |
| CDY24238 | Canola | nucleus | 48.03 | 43.65 |
| CDY64562 | Canola | nucleus | 45.52 | 43.2 |
| CDX82430 | Canola | nucleus | 29.75 | 41.71 |
| CDX82569 | Canola | nucleus | 44.8 | 41.39 |
| Solyc07g045030.2.1 | Tomato | nucleus | 49.1 | 41.39 |
| CDY22671 | Canola | nucleus | 29.03 | 40.7 |
| PGSC0003DMT400049124 | Potato | nucleus | 35.48 | 39.6 |
| CDY60122 | Canola | nucleus | 46.24 | 39.45 |
| EES17466 | Sorghum | nucleus | 41.94 | 38.49 |
| Zm00001d013151_P001 | Maize | cytosol | 45.88 | 38.1 |
| HORVU5Hr1G099470.2 | Barley | cytosol | 45.52 | 37.69 |
| TraesCS5A01G411900.1 | Wheat | nucleus | 45.88 | 37.32 |
| TraesCS5D01G421100.1 | Wheat | nucleus | 45.16 | 36.95 |
| Zm00001d031164_P001 | Maize | nucleus | 40.5 | 36.93 |
| EER95852 | Sorghum | nucleus | 45.16 | 36.73 |
| HORVU5Hr1G099390.2 | Barley | nucleus | 37.99 | 36.68 |
| TraesCS5B01G415700.1 | Wheat | nucleus | 45.88 | 36.57 |
| TraesCS5B01G415600.1 | Wheat | nucleus | 45.52 | 36.18 |
| EER93360 | Sorghum | nucleus | 47.67 | 35.95 |
| TraesCS4B01G384700.1 | Wheat | cytoskeleton, cytosol, nucleus | 43.73 | 35.88 |
| Zm00001d018773_P001 | Maize | nucleus | 45.88 | 35.75 |
| TraesCS5D01G420800.1 | Wheat | nucleus | 46.59 | 35.71 |
| Os03t0777000-01 | Rice | nucleus | 45.88 | 35.36 |
| TraesCS5A01G411800.1 | Wheat | nucleus | 44.44 | 35.23 |
| HORVU5Hr1G099460.1 | Barley | nucleus | 43.37 | 34.97 |
| TraesCS5A01G411700.1 | Wheat | nucleus | 46.95 | 34.75 |
| TraesCS5B01G415400.1 | Wheat | nucleus | 46.59 | 34.48 |
| Zm00001d034277_P001 | Maize | cytosol, mitochondrion, nucleus | 45.16 | 34.24 |
| CDY23551 | Canola | nucleus | 45.88 | 34.13 |
| TraesCS5D01G421000.1 | Wheat | nucleus | 45.52 | 33.07 |
| CDX82432 | Canola | nucleus | 28.67 | 32.39 |
| CDY40894 | Canola | nucleus | 30.11 | 32.31 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 29.39 | 31.54 |
| CDX95931 | Canola | cytosol | 30.47 | 31.48 |
| CDY40930 | Canola | cytosol | 30.47 | 31.48 |
| CDY07348 | Canola | nucleus | 30.47 | 31.37 |
| CDY51500 | Canola | nucleus | 30.47 | 31.25 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 28.67 | 31.01 |
| CDX89253 | Canola | nucleus | 33.33 | 31.0 |
| CDY41537 | Canola | nucleus | 27.6 | 30.8 |
| CDX67438 | Canola | nucleus | 36.92 | 30.75 |
| CDY11662 | Canola | nucleus | 36.92 | 30.75 |
| CDY42902 | Canola | nucleus | 30.82 | 30.71 |
| CDX92828 | Canola | nucleus | 32.97 | 30.67 |
| CDY29303 | Canola | nucleus | 32.97 | 30.67 |
| CDY29836 | Canola | nucleus | 32.97 | 30.67 |
| CDX84443 | Canola | nucleus | 27.6 | 30.56 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 28.67 | 30.53 |
| CDX90054 | Canola | nucleus | 31.18 | 30.53 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 28.32 | 30.15 |
| CDY15158 | Canola | nucleus | 30.82 | 30.07 |
| CDY31350 | Canola | nucleus | 27.96 | 29.43 |
| CDY26794 | Canola | nucleus | 29.39 | 29.39 |
| CDY47486 | Canola | nucleus | 29.39 | 29.39 |
| CDY47485 | Canola | nucleus | 29.03 | 29.03 |
| CDY39487 | Canola | nucleus | 29.03 | 28.83 |
| CDX69919 | Canola | nucleus | 28.67 | 28.78 |
| CDY21567 | Canola | nucleus | 28.67 | 28.78 |
| CDY69545 | Canola | nucleus | 31.9 | 28.53 |
| CDY02222 | Canola | nucleus | 28.67 | 28.47 |
| CDX71329 | Canola | endoplasmic reticulum, extracellular | 31.18 | 28.34 |
| CDY53806 | Canola | nucleus | 32.26 | 28.3 |
| CDX75833 | Canola | nucleus | 30.11 | 28.28 |
| CDX81120 | Canola | nucleus | 24.01 | 27.8 |
| CDY21844 | Canola | nucleus | 31.18 | 27.44 |
| CDY31385 | Canola | cytosol | 31.18 | 27.27 |
| CDX98560 | Canola | nucleus | 31.18 | 27.19 |
| CDY20109 | Canola | nucleus | 30.82 | 27.13 |
| CDX97674 | Canola | nucleus | 31.18 | 27.1 |
| CDY65270 | Canola | nucleus | 38.35 | 27.09 |
| CDY01755 | Canola | nucleus | 38.35 | 26.95 |
| CDY12886 | Canola | nucleus | 30.47 | 26.48 |
| CDY50880 | Canola | nucleus | 30.82 | 26.46 |
| CDY40970 | Canola | nucleus | 30.47 | 26.4 |
| CDY56427 | Canola | nucleus | 30.82 | 26.3 |
| CDY39846 | Canola | mitochondrion | 27.6 | 26.19 |
| CDX95910 | Canola | nucleus | 37.63 | 25.67 |
| CDY46433 | Canola | nucleus | 37.63 | 25.49 |
| CDY20131 | Canola | nucleus | 31.54 | 25.14 |
| CDX97675 | Canola | nucleus | 30.82 | 25.07 |
| CDY29983 | Canola | nucleus | 31.18 | 24.51 |
| CDX98562 | Canola | nucleus | 30.47 | 23.68 |
| CDX84050 | Canola | nucleus | 16.13 | 23.32 |
| CDY17437 | Canola | nucleus | 32.62 | 22.41 |
| CDY04129 | Canola | nucleus | 32.62 | 22.3 |
| CDY03050 | Canola | nucleus | 32.97 | 22.22 |
| CDY17595 | Canola | nucleus | 32.97 | 22.06 |
| CDY09368 | Canola | nucleus | 31.9 | 21.92 |
| CDY15835 | Canola | nucleus | 31.9 | 21.87 |
| CDY54324 | Canola | extracellular | 7.89 | 7.94 |
| CDY16201 | Canola | plastid | 6.45 | 6.84 |
| CDX82429 | Canola | plastid | 1.08 | 2.8 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078IW82 | UniProt:A0A078IW82 | EnsemblPlants:CDY53654 | ProteinID:CDY53654 |
| ProteinID:CDY53654.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00011138001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR44543 |
| PANTHER:PTHR44543:SF2 | SUPFAM:SSF101941 | UniParc:UPI0004EF16A4 | : | : | : |
Description
BnaC04g52880DBnaC04g52880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IW82]
Coordinates
chrLK033224:-:15945..18046
Molecular Weight (calculated)
32248.8 Da
IEP (calculated)
7.948
GRAVY (calculated)
-0.752
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGEVSKDHQ EEDETTLPGF RFHPTDEELL EYYLRRKVEN KPIKLELIKQ VDIYKYDPWD LPRVSSVGEK EWYFFCMRGR KYRNSVRPNR VTSSGFWKAT
101: GIDKPVYSNL DCVGLKKSLV YYLGSAGKGT KTDWMMHEFR LPSTTKTDSP VQQAEVWTLC RIFKRVTHQR NPTIVQSNRK PVITLADSCS KTSSLDSDHT
201: SHRVVDSLSH KLHEPHLQLQ SPTQNPYWNQ LTSFGFSQPT YTCHDNSFLS FENINGGDFI GDSASWDELR SVIDGNTKH
101: GIDKPVYSNL DCVGLKKSLV YYLGSAGKGT KTDWMMHEFR LPSTTKTDSP VQQAEVWTLC RIFKRVTHQR NPTIVQSNRK PVITLADSCS KTSSLDSDHT
201: SHRVVDSLSH KLHEPHLQLQ SPTQNPYWNQ LTSFGFSQPT YTCHDNSFLS FENINGGDFI GDSASWDELR SVIDGNTKH
001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
Arabidopsis Description
JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.