Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra000282.1-P Field mustard nucleus 52.35 98.16
CDY42810 Canola nucleus 96.47 96.47
CDY30373 Canola nucleus 47.45 87.36
CDY14865 Canola nucleus 47.06 86.64
CDY53654 Canola nucleus 46.67 85.3
CDY55499 Canola nucleus 46.47 84.95
AT2G43000.1 Thale cress nucleus 45.49 84.36
GSMUA_Achr4P23030_001 Banana nucleus 24.51 50.0
CDY26031 Canola cytosol 14.71 49.67
GSMUA_Achr7P00860_001 Banana nucleus 25.49 49.62
GSMUA_Achr10P... Banana cytosol 25.29 48.31
KRH73618 Soybean cytosol 29.41 46.88
GSMUA_Achr4P32010_001 Banana nucleus 26.27 46.69
CDY26032 Canola cytosol 14.71 46.58
CDY43391 Canola nucleus 26.86 46.44
KRH14512 Soybean nucleus 29.41 46.01
CDY24238 Canola nucleus 27.45 45.6
CDY64562 Canola nucleus 26.08 45.24
Zm00001d007850_P001 Maize nucleus 22.16 45.02
GSMUA_Achr5P02170_001 Banana nucleus 27.06 44.95
GSMUA_Achr9P10040_001 Banana nucleus 26.67 44.74
CDX82569 Canola nucleus 25.69 43.38
Solyc07g045030.2.1 Tomato nucleus 27.84 42.9
CDX82430 Canola nucleus 16.08 41.21
CDY60122 Canola nucleus 26.27 40.98
PGSC0003DMT400049124 Potato nucleus 19.8 40.4
CDY22671 Canola nucleus 15.69 40.2
EES17466 Sorghum nucleus 22.75 38.16
Zm00001d013151_P001 Maize cytosol 24.9 37.8
HORVU5Hr1G099470.2 Barley cytosol 24.71 37.39
Zm00001d031164_P001 Maize nucleus 22.35 37.25
TraesCS5A01G411900.1 Wheat nucleus 24.9 37.03
EER95852 Sorghum nucleus 24.71 36.73
TraesCS5D01G421100.1 Wheat nucleus 24.51 36.66
TraesCS5B01G415700.1 Wheat nucleus 24.9 36.29
HORVU5Hr1G099390.2 Barley nucleus 20.39 35.99
TraesCS4B01G384700.1 Wheat cytoskeleton, cytosol, nucleus 23.92 35.88
EER93360 Sorghum nucleus 25.88 35.68
TraesCS5B01G415600.1 Wheat nucleus 24.51 35.61
Zm00001d018773_P001 Maize nucleus 24.9 35.47
CDY23551 Canola nucleus 26.08 35.47
Os03t0777000-01 Rice nucleus 25.1 35.36
TraesCS5D01G420800.1 Wheat nucleus 25.1 35.16
TraesCS5A01G411800.1 Wheat nucleus 24.12 34.94
HORVU5Hr1G099460.1 Barley nucleus 23.53 34.68
Zm00001d034277_P001 Maize cytosol, mitochondrion, nucleus 24.9 34.51
TraesCS5A01G411700.1 Wheat nucleus 25.29 34.22
TraesCS5B01G415400.1 Wheat nucleus 25.1 33.95
CDY40732 Canola cytosol, nucleus, plastid 16.67 32.95
TraesCS5D01G421000.1 Wheat nucleus 24.71 32.81
CDY41537 Canola nucleus 16.08 32.8
CDX82432 Canola nucleus 15.88 32.79
CDY44788 Canola cytosol, nucleus, plastid 16.67 32.44
CDX84443 Canola nucleus 15.88 32.14
CDY31350 Canola nucleus 16.47 31.7
CDX78352 Canola cytosol, nucleus, plastid 16.27 31.68
CDY07348 Canola nucleus 16.67 31.37
CDX89253 Canola nucleus 18.43 31.33
CDX92828 Canola nucleus 18.43 31.33
CDY29836 Canola nucleus 18.43 31.33
CDY51500 Canola nucleus 16.67 31.25
CDY40894 Canola nucleus 15.88 31.15
CDX95931 Canola cytosol 16.47 31.11
CDY40930 Canola cytosol 16.47 31.11
CDX67438 Canola nucleus 20.39 31.04
CDY29303 Canola nucleus 18.24 31.0
CDX90054 Canola nucleus 17.25 30.88
CDY11662 Canola nucleus 20.2 30.75
CDX69919 Canola nucleus 16.67 30.58
CDY21567 Canola nucleus 16.67 30.58
CDY15158 Canola nucleus 17.06 30.42
CDY38346 Canola cytosol, nucleus, plastid 15.49 30.38
CDY42902 Canola nucleus 16.67 30.36
CDY26794 Canola nucleus 16.27 29.75
CDY47486 Canola nucleus 16.27 29.75
CDX81120 Canola nucleus 13.92 29.46
CDY47485 Canola nucleus 16.08 29.39
CDY39487 Canola nucleus 16.08 29.18
CDX71329 Canola endoplasmic reticulum, extracellular 17.45 28.99
CDX75833 Canola nucleus 16.86 28.96
CDY02222 Canola nucleus 15.88 28.83
CDY31385 Canola cytosol 17.45 27.9
CDY39846 Canola mitochondrion 16.08 27.89
CDY69545 Canola nucleus 17.06 27.88
CDY21844 Canola nucleus 17.25 27.76
CDY53806 Canola nucleus 17.25 27.67
CDX98560 Canola nucleus 17.25 27.5
CDY20109 Canola nucleus 17.06 27.44
CDX97674 Canola nucleus 17.25 27.41
CDY65270 Canola nucleus 21.18 27.34
CDY12886 Canola nucleus 17.06 27.1
CDY40970 Canola nucleus 17.06 27.02
CDY56427 Canola nucleus 16.86 26.3
CDY01755 Canola nucleus 20.39 26.2
CDY50880 Canola nucleus 16.67 26.15
CDY46433 Canola nucleus 20.78 25.73
CDX95910 Canola nucleus 20.59 25.67
CDY20131 Canola nucleus 17.25 25.14
CDX97675 Canola nucleus 16.86 25.07
CDY29983 Canola nucleus 16.86 24.23
CDX98562 Canola nucleus 16.67 23.68
CDX84050 Canola nucleus 8.82 23.32
CDY17437 Canola nucleus 17.84 22.41
CDY03050 Canola nucleus 17.84 21.98
CDY17595 Canola nucleus 17.84 21.82
CDY04129 Canola nucleus 17.45 21.81
CDY09368 Canola nucleus 17.25 21.67
CDY15835 Canola nucleus 17.25 21.62
CDY54324 Canola extracellular 4.71 8.66
CDY16201 Canola plastid 3.92 7.6
CDX82429 Canola plastid 0.78 3.74
Protein Annotations
MapMan:15.5.17Gene3D:3.30.1330.80Gene3D:3.30.310.150GO:A0A078D307EnsemblPlants:CDX83510ProteinID:CDX83510
ProteinID:CDX83510.1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0006139
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00139105001
InterPro:IPR003441InterPro:IPR005175InterPro:IPR036093InterPro:NAC-domInterPro:NAC_dom_sfPFAM:PF02365
PFAM:PF03479InterPro:PPC_domPFscan:PS51005PFscan:PS51742PANTHER:PTHR31100PANTHER:PTHR31100:SF17
SUPFAM:SSF101941SUPFAM:SSF117856TMHMM:TMhelixUniParc:UPI0004EEA531SEG:seg:
Description
BnaA03g19960D
Coordinates
chrLK031832:+:1871105..1874643
Molecular Weight (calculated)
56495.0 Da
IEP (calculated)
9.004
GRAVY (calculated)
-0.493
Length
510 amino acids
Sequence
(BLAST)
001: MSCEGKDQEE EDEAILPGFR FHPTDEELLG FYLRRKVENK PIKLELIKQI DIYKFDPWDL PRVSSVGENE WYFFCMRGRK YKNSVRPNRV TGSGFWKATG
101: IDKPVYSNFN CIGLKKSLVY YLGSAGKGSK TDWMMHEFRL PTTTKTDSTA QQAEVWTLCR IFKRVTHHRN PTIIQQNRKP VITLTDSCSK TSSLDSDHTS
201: HRVVDSLPHK LHEPQTQNPY WNQLTTVGFN QPTYTCHDNN FLSFLNINGG DFIGDSASWD ELRSSLLPLR NHEAAERVNN NNNNNSLKAL PKAVQPVSSI
301: DGGMVKRPRG RPAGSKNKPK PPIIVTHDSP NSLRAHAVEI SSGNDICEAL SDYARRKQRG LCILSANGCV TNVTLRQPAS SGAIVTLHGR FEILSLLGSI
401: LPPPAPLGIT GLTIYLAGHQ GRVVGGGVVG GLIASGPVVI MAASFMNAVF DRLPLDDDES ASMQNQQYYQ NGRSRPLDDI HGLSQNLLTN GNSGSDGYSW
501: GAAQRAMSKP
Best Arabidopsis Sequence Match ( AT2G43000.1 )
(BLAST)
001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
Arabidopsis Description
JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.