Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08790.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT5G08790.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78352 | Canola | cytosol, nucleus, plastid | 96.27 | 88.55 |
| Bra006015.1-P | Field mustard | cytosol, nucleus, plastid | 95.85 | 82.5 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 85.48 | 78.63 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 83.82 | 78.29 |
| CDX69919 | Canola | nucleus | 87.97 | 76.26 |
| CDY21567 | Canola | nucleus | 87.14 | 75.54 |
| AT5G08790.1 | Thale cress | nucleus | 87.55 | 74.56 |
| CDY31350 | Canola | nucleus | 75.1 | 68.3 |
| CDY41537 | Canola | nucleus | 70.54 | 68.0 |
| CDX84443 | Canola | nucleus | 70.95 | 67.86 |
| CDY39846 | Canola | mitochondrion | 75.1 | 61.56 |
| CDY26031 | Canola | cytosol | 34.85 | 55.63 |
| KRH59618 | Soybean | nucleus | 65.56 | 53.02 |
| CDY26032 | Canola | cytosol | 34.44 | 51.55 |
| KRH63977 | Soybean | nucleus | 61.83 | 51.2 |
| Solyc04g009440.2.1 | Tomato | nucleus | 63.07 | 50.5 |
| CDY15158 | Canola | nucleus | 59.75 | 50.35 |
| CDX84050 | Canola | nucleus | 40.25 | 50.26 |
| CDX90054 | Canola | nucleus | 59.34 | 50.18 |
| KRH53959 | Soybean | nucleus | 61.41 | 50.17 |
| PGSC0003DMT400082472 | Potato | nucleus | 63.07 | 50.16 |
| GSMUA_Achr10P... | Banana | nucleus | 52.7 | 49.8 |
| CDY40894 | Canola | nucleus | 53.53 | 49.62 |
| VIT_07s0031g02610.t01 | Wine grape | nucleus | 60.17 | 49.32 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 52.7 | 48.85 |
| GSMUA_Achr6P25380_001 | Banana | nucleus | 54.36 | 47.81 |
| KXG33829 | Sorghum | nucleus | 57.26 | 47.42 |
| GSMUA_Achr6P18720_001 | Banana | nucleus | 53.11 | 46.72 |
| Zm00001d042609_P001 | Maize | cytosol, mitochondrion, nucleus | 56.85 | 46.44 |
| HORVU1Hr1G063740.1 | Barley | nucleus | 56.43 | 46.42 |
| TraesCS3B01G439600.1 | Wheat | nucleus | 57.26 | 46.31 |
| TraesCS3A01G406000.1 | Wheat | nucleus | 57.26 | 46.15 |
| TraesCS3D01G401200.1 | Wheat | nucleus | 57.26 | 46.15 |
| TraesCS1A01G263700.1 | Wheat | nucleus | 56.02 | 46.08 |
| CDX82430 | Canola | nucleus | 37.76 | 45.73 |
| Os01t0884300-01 | Rice | nucleus | 57.26 | 45.54 |
| GSMUA_Achr7P23250_001 | Banana | nucleus | 50.62 | 45.52 |
| TraesCS1D01G263800.1 | Wheat | nucleus | 56.43 | 45.33 |
| TraesCS1B01G274300.1 | Wheat | nucleus | 56.02 | 44.85 |
| CDY22671 | Canola | nucleus | 36.51 | 44.22 |
| GSMUA_Achr6P17720_001 | Banana | nucleus | 51.87 | 43.1 |
| Os11t0184900-02 | Rice | nucleus | 54.77 | 40.12 |
| KXG22031 | Sorghum | nucleus | 56.02 | 39.59 |
| Zm00001d038221_P001 | Maize | plastid | 55.6 | 39.53 |
| CDX82432 | Canola | nucleus | 39.83 | 38.87 |
| GSMUA_Achr3P18990_001 | Banana | plastid | 53.11 | 38.44 |
| TraesCS4A01G219700.1 | Wheat | nucleus | 53.11 | 38.21 |
| TraesCS4D01G094400.1 | Wheat | nucleus | 53.11 | 38.21 |
| TraesCS4B01G098200.1 | Wheat | nucleus | 52.7 | 38.02 |
| HORVU4Hr1G017430.7 | Barley | nucleus | 52.28 | 37.95 |
| Zm00001d000112_P001 | Maize | nucleus | 52.7 | 35.38 |
| CDX92828 | Canola | nucleus | 41.49 | 33.33 |
| CDY29836 | Canola | nucleus | 41.49 | 33.33 |
| OQU83033 | Sorghum | nucleus | 52.7 | 33.07 |
| CDX75833 | Canola | nucleus | 40.66 | 33.0 |
| CDX89253 | Canola | nucleus | 40.25 | 32.33 |
| CDY29303 | Canola | nucleus | 40.25 | 32.33 |
| CDY40930 | Canola | cytosol | 36.1 | 32.22 |
| CDX95931 | Canola | cytosol | 35.68 | 31.85 |
| CDY69545 | Canola | nucleus | 41.08 | 31.73 |
| CDX98560 | Canola | nucleus | 41.91 | 31.56 |
| CDX97674 | Canola | nucleus | 41.91 | 31.46 |
| CDY12886 | Canola | nucleus | 41.91 | 31.46 |
| CDY40970 | Canola | nucleus | 41.91 | 31.37 |
| CDY07348 | Canola | nucleus | 35.27 | 31.37 |
| CDY51500 | Canola | nucleus | 35.27 | 31.25 |
| CDY20109 | Canola | nucleus | 41.08 | 31.23 |
| CDY21844 | Canola | nucleus | 41.08 | 31.23 |
| CDY53806 | Canola | nucleus | 40.66 | 30.82 |
| CDY42902 | Canola | nucleus | 35.68 | 30.71 |
| CDX97675 | Canola | nucleus | 41.49 | 29.15 |
| CDY56427 | Canola | nucleus | 39.0 | 28.75 |
| CDY50880 | Canola | nucleus | 37.76 | 28.0 |
| CDY20131 | Canola | nucleus | 40.25 | 27.71 |
| CDX98562 | Canola | nucleus | 41.08 | 27.58 |
| CDY29983 | Canola | nucleus | 39.42 | 26.76 |
| CDY30373 | Canola | nucleus | 28.22 | 24.55 |
| CDY26794 | Canola | nucleus | 28.22 | 24.37 |
| CDY47485 | Canola | nucleus | 28.22 | 24.37 |
| CDY47486 | Canola | nucleus | 28.22 | 24.37 |
| CDY14865 | Canola | nucleus | 27.8 | 24.19 |
| CDY53654 | Canola | nucleus | 27.8 | 24.01 |
| CDY55499 | Canola | nucleus | 27.8 | 24.01 |
| CDY39487 | Canola | nucleus | 26.97 | 23.13 |
| CDY64562 | Canola | nucleus | 27.8 | 22.79 |
| CDY02222 | Canola | nucleus | 26.56 | 22.78 |
| CDY43391 | Canola | nucleus | 27.39 | 22.37 |
| CDX82569 | Canola | nucleus | 27.8 | 22.19 |
| CDY24238 | Canola | nucleus | 27.8 | 21.82 |
| CDX71329 | Canola | endoplasmic reticulum, extracellular | 27.39 | 21.5 |
| CDY60122 | Canola | nucleus | 28.63 | 21.1 |
| CDY31385 | Canola | cytosol | 27.39 | 20.69 |
| CDY11662 | Canola | nucleus | 28.63 | 20.6 |
| CDX67438 | Canola | nucleus | 28.22 | 20.3 |
| CDY23551 | Canola | nucleus | 28.63 | 18.4 |
| CDY65270 | Canola | nucleus | 29.88 | 18.23 |
| CDY15835 | Canola | nucleus | 30.71 | 18.18 |
| CDY09368 | Canola | nucleus | 30.29 | 17.98 |
| CDY17437 | Canola | nucleus | 30.29 | 17.98 |
| CDY04129 | Canola | nucleus | 30.29 | 17.89 |
| CDY03050 | Canola | nucleus | 30.29 | 17.63 |
| CDY01755 | Canola | nucleus | 29.05 | 17.63 |
| CDY17595 | Canola | nucleus | 30.29 | 17.51 |
| CDY46433 | Canola | nucleus | 29.46 | 17.23 |
| CDX95910 | Canola | nucleus | 29.05 | 17.11 |
| CDX83510 | Canola | nucleus | 29.46 | 13.92 |
| CDY42810 | Canola | nucleus | 29.46 | 13.92 |
| CDX82429 | Canola | plastid | 2.9 | 6.54 |
| CDY54324 | Canola | extracellular | 4.98 | 4.33 |
| CDY16201 | Canola | plastid | 4.15 | 3.8 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078CW95 | EnsemblPlants:CDX81120 | ProteinID:CDX81120 | ProteinID:CDX81120.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00134569001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31719 |
| PANTHER:PTHR31719:SF16 | SUPFAM:SSF101941 | UniParc:UPI0004EEF239 | : | : | : |
Description
BnaC03g03740D
Coordinates
chrLK031823:-:1820690..1822290
Molecular Weight (calculated)
27683.9 Da
IEP (calculated)
8.952
GRAVY (calculated)
-0.691
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFYLIRKCA SEQISAPVIA EIDLYKFNPW ELPEMSLYGD KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGKP KTLGIKKALV FYAGKAPKGI
101: KTNWIMHEYR LANVDRSASV SKKNNLRLDD WVLCRIYNKK GTMEKYYPAD EKPRIMTDHS GGHSHVVSPD AKEVQSEPKW RELEDALEAF DSSMFGGGSM
201: DMLQSDAYIP QFMHQPTDCF TTLQDPFEQK PFLNWSFAPQ G
101: KTNWIMHEYR LANVDRSASV SKKNNLRLDD WVLCRIYNKK GTMEKYYPAD EKPRIMTDHS GGHSHVVSPD AKEVQSEPKW RELEDALEAF DSSMFGGGSM
201: DMLQSDAYIP QFMHQPTDCF TTLQDPFEQK PFLNWSFAPQ G
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.