Factsheet for Os01t0884300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

nucleus: 17587305
nucleus: 18273684

gfp PMID: 18273684 doi

H Hu, J You, Y Fang, X Zhu, Z Qi, L Xiong

National Center of Plant Gene Research Wuhan, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China.

gfp PMID: 17587305 doi

K Nakashima, LS Tran, D Van Nguyen, M Fujita, K Maruyama, D Todaka, Y Ito, N Hayashi, K Shinozaki, K Yamaguchi-Shinozaki

Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305-8686, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0362300-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08790.1	Os10t0362300-03	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33829	Sorghum	nucleus	85.15	88.66
Zm00001d042609_P001	Maize	cytosol, mitochondrion, nucleus	83.83	86.1
TraesCS3D01G401200.1	Wheat	nucleus	80.86	81.94
TraesCS3A01G406000.1	Wheat	nucleus	80.86	81.94
TraesCS3B01G439600.1	Wheat	nucleus	80.53	81.88
KRH17977	Soybean	nucleus	58.09	65.67
VIT_18s0001g02300.t01	Wine grape	nucleus	63.7	64.55
KRH16387	Soybean	nucleus	59.08	63.93
CDX90054	Canola	nucleus	60.07	63.86
Bra033239.1-P	Field mustard	nucleus	60.07	63.86
AT1G01720.1	Thale cress	nucleus	60.4	63.32
CDY15158	Canola	nucleus	59.74	63.29
PGSC0003DMT400023917	Potato	nucleus	60.73	63.23
Solyc11g017470.1.1	Tomato	nucleus	60.07	62.54
GSMUA_Achr6P25380_001	Banana	nucleus	56.44	62.41
VIT_07s0031g02610.t01	Wine grape	nucleus	60.07	61.9
AT1G77450.1	Thale cress	cytosol, nucleus, plastid	51.49	61.66
KRH53247	Soybean	nucleus	60.73	61.54
KRH64668	Soybean	nucleus	60.73	61.33
Solyc06g060230.2.1	Tomato	nucleus	59.74	61.15
PGSC0003DMT400045294	Potato	nucleus	59.41	60.81
CDY40894	Canola	nucleus	52.15	60.77
CDY40732	Canola	cytosol, nucleus, plastid	51.49	60.47
KRH59618	Soybean	nucleus	59.08	60.07
Bra038663.1-P	Field mustard	nucleus	49.51	60.0
CDY38346	Canola	cytosol, nucleus, plastid	51.49	60.0
CDY41537	Canola	nucleus	49.51	60.0
Bra008309.1-P	Field mustard	cytosol, nucleus, plastid	51.49	60.0
KRH63977	Soybean	nucleus	57.43	59.79
CDX84443	Canola	nucleus	49.51	59.52
KRH53959	Soybean	nucleus	57.76	59.32
CDY44788	Canola	cytosol, nucleus, plastid	51.16	59.16
CDX78352	Canola	cytosol, nucleus, plastid	50.83	58.78
GSMUA_Achr6P17720_001	Banana	nucleus	56.11	58.62
Bra029201.1-P	Field mustard	cytosol	51.16	58.49
CDY31350	Canola	nucleus	51.16	58.49
Bra028645.1-P	Field mustard	nucleus	53.47	58.27
CDY21567	Canola	nucleus	52.81	57.55
CDX81120	Canola	nucleus	45.54	57.26
CDX69919	Canola	nucleus	52.48	57.19
Bra009370.1-P	Field mustard	nucleus	52.48	57.19
Bra006015.1-P	Field mustard	cytosol, nucleus, plastid	52.81	57.14
Solyc04g009440.2.1	Tomato	nucleus	56.77	57.14
AT5G08790.1	Thale cress	nucleus	53.14	56.89
PGSC0003DMT400082472	Potato	nucleus	56.11	56.11
Os11t0126900-01	Rice	nucleus	31.02	54.97
CDX84050	Canola	nucleus	34.32	53.89
Os11t0184900-02	Rice	nucleus	57.1	52.58
CDY39846	Canola	mitochondrion	50.83	52.38
GSMUA_Achr3P18990_001	Banana	plastid	56.77	51.65
AT5G63790.2	Thale cress	cytosol	51.82	48.76
Os07t0225300-01	Rice	nucleus	41.25	45.29
Os03t0815100-01	Rice	nucleus	43.56	41.77
Os01t0816100-01	Rice	nucleus	41.91	39.94
Os02t0745250-00	Rice	nucleus	24.42	39.57
Os01t0104200-00	Rice	nucleus	40.26	35.99
Os05t0415400-01	Rice	extracellular, nucleus, plastid	31.35	30.65
Os11t0127600-01	Rice	nucleus	36.3	30.64
Os03t0327800-01	Rice	nucleus	38.61	29.85
Os12t0123700-01	Rice	nucleus	37.62	29.01
Os07t0566500-01	Rice	nucleus	40.26	28.71
Os06t0726300-01	Rice	nucleus	26.4	27.4
Os03t0133000-01	Rice	nucleus	28.05	26.9
Os03t0777000-01	Rice	nucleus	29.04	24.31
Os08t0436700-01	Rice	nucleus	29.04	22.86
Os01t0888300-01	Rice	nucleus	29.7	19.91
Os05t0418800-00	Rice	plastid	30.36	18.93
Os02t0745300-00	Rice	plastid	2.31	4.24

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EntrezGene:4325006	ProteinID:AAK17067.1	EMBL:AB028185	EMBL:AK068392
ProteinID:BAB90381.1	ProteinID:BAF06930.1	ProteinID:BAS75586.1	ProteinID:EAZ14398.1	EMBL:EU846993	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009605
GO:GO:0009607	GO:GO:0009628	GO:GO:0009987	GO:GO:0040007	GO:GO:0040008	GO:GO:0043565
GO:GO:0045893	GO:GO:0048364	GO:GO:1900150	GO:GO:1901002	GO:GO:1902584	InterPro:IPR003441
InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	EnsemblPlantsGene:Os01g0884300	EnsemblPlants:Os01t0884300-01	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR31719	PANTHER:PTHR31719:SF43	UniProt:Q7F2L3	SUPFAM:SSF101941	UniParc:UPI00000A73C6
RefSeq:XP_015620920.1	SEG:seg	:	:	:	:

Description

NAC DOMAIN-CONTAINING PROTEIN 6No apical meristem (NAM) protein domain containing protein. (Os01t0884300-01)

Coordinates

chr1:-:38398996..38401481

Molecular Weight (calculated)

32908.4 Da

IEP (calculated)

9.057

GRAVY (calculated)

-0.366

Length

303 amino acids

Sequence
(BLAST)

001: MSGGQDLQLP PGFRFHPTDE ELVMHYLCRR CAGLPIAVPI IAEIDLYKFD PWQLPRMALY GEKEWYFFSP RDRKYPNGSR PNRAAGSGYW KATGADKPVG
101: SPKPVAIKKA LVFYAGKAPK GEKTNWIMHE YRLADVDRSA RKKNSLRLDD WVLCRIYNKK GGLEKPPAAA VAAAGMVSSG GGVQRKPMVG VNAAVSSPPE
201: QKPVVAGPAF PDLAAYYDRP SDSMPRLHAD SSCSEQVLSP EFACEVQSQP KISEWERTFA TVGPINPAAS ILDPAGSGGL GGLGGGGSDP LLQDILMYWG
301: KPF

Best Arabidopsis Sequence Match ( AT1G01720.1 )
(BLAST)

001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY

Arabidopsis Description

NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.