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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:plasma membrane
nucleus: 20632034
gfp PMID: 20632034 doi
H Takasaki, K Maruyama, S Kidokoro, Y Ito, Y Fujita, K Shinozaki, K Yamaguchi-Shinozaki, K Nakashima
Laboratory of Plant Molecular Physiology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os10t0362300-03

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G08790.1 Os10t0362300-03 AT5G35750.1 18642946
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G017430.7 Barley nucleus 78.72 78.01
TraesCS4B01G098200.1 Wheat nucleus 78.72 77.54
TraesCS4D01G094400.1 Wheat nucleus 78.72 77.31
TraesCS4A01G219700.1 Wheat nucleus 78.42 77.01
Zm00001d000112_P001 Maize nucleus 75.38 69.08
OQU83033 Sorghum nucleus 74.47 63.8
GSMUA_Achr10P... Banana nucleus 49.24 63.53
GSMUA_Achr6P18720_001 Banana nucleus 51.06 61.31
GSMUA_Achr7P23250_001 Banana nucleus 48.33 59.33
CDY40732 Canola cytosol, nucleus, plastid 45.9 58.53
Bra038663.1-P Field mustard nucleus 44.07 58.0
CDY41537 Canola nucleus 44.07 58.0
KRH17977 Soybean nucleus 47.11 57.84
VIT_18s0001g02300.t01 Wine grape nucleus 51.98 57.19
Os01t0884300-01 Rice nucleus 52.58 57.1
AT1G77450.1 Thale cress cytosol, nucleus, plastid 43.77 56.92
CDY44788 Canola cytosol, nucleus, plastid 45.29 56.87
CDX84443 Canola nucleus 43.47 56.75
CDX78352 Canola cytosol, nucleus, plastid 44.98 56.49
AT1G01720.1 Thale cress nucleus 49.54 56.4
KRH63977 Soybean nucleus 49.85 56.36
CDY21567 Canola nucleus 47.42 56.12
CDY15158 Canola nucleus 48.33 55.59
KRH53959 Soybean nucleus 49.85 55.59
CDY31350 Canola nucleus 44.68 55.47
Bra029201.1-P Field mustard cytosol 44.68 55.47
CDX90054 Canola nucleus 48.02 55.44
Bra033239.1-P Field mustard nucleus 48.02 55.44
Solyc06g060230.2.1 Tomato nucleus 49.85 55.41
Bra028645.1-P Field mustard nucleus 46.81 55.4
CDY40894 Canola nucleus 43.77 55.38
KRH59618 Soybean nucleus 50.15 55.37
KRH16387 Soybean nucleus 47.11 55.36
KRH64668 Soybean nucleus 50.15 55.0
PGSC0003DMT400023917 Potato nucleus 48.63 54.98
CDX81120 Canola nucleus 40.12 54.77
AT5G08790.1 Thale cress nucleus 47.11 54.77
CDX69919 Canola nucleus 46.2 54.68
Bra009370.1-P Field mustard nucleus 46.2 54.68
CDY38346 Canola cytosol, nucleus, plastid 43.16 54.62
Bra008309.1-P Field mustard cytosol, nucleus, plastid 43.16 54.62
Solyc11g017470.1.1 Tomato nucleus 48.02 54.3
Bra006015.1-P Field mustard cytosol, nucleus, plastid 46.2 54.29
KRH53247 Soybean nucleus 49.24 54.18
PGSC0003DMT400045294 Potato nucleus 48.63 54.05
Os11t0126900-01 Rice nucleus 27.96 53.8
VIT_07s0031g02610.t01 Wine grape nucleus 48.02 53.74
Solyc04g009440.2.1 Tomato nucleus 48.63 53.16
PGSC0003DMT400082472 Potato nucleus 48.94 53.14
CDY39846 Canola mitochondrion 44.07 49.32
CDX84050 Canola nucleus 28.57 48.7
AT5G63790.2 Thale cress cytosol 46.2 47.2
Os07t0225300-01 Rice nucleus 37.39 44.57
Os03t0815100-01 Rice nucleus 40.12 41.77
Os02t0745250-00 Rice nucleus 22.49 39.57
Os01t0816100-01 Rice nucleus 37.99 39.31
Os01t0104200-00 Rice nucleus 35.56 34.51
Os07t0566500-01 Rice nucleus 37.99 29.41
Os05t0415400-01 Rice extracellular, nucleus, plastid 27.66 29.35
Os11t0127600-01 Rice nucleus 31.31 28.69
Os03t0327800-01 Rice nucleus 33.43 28.06
Os12t0123700-01 Rice nucleus 33.43 27.99
Os03t0133000-01 Rice nucleus 26.14 27.22
Os06t0726300-01 Rice nucleus 23.4 26.37
Os03t0777000-01 Rice nucleus 25.84 23.48
Os08t0436700-01 Rice nucleus 26.14 22.34
Os01t0888300-01 Rice nucleus 27.36 19.91
Os05t0418800-00 Rice plastid 26.75 18.11
Os02t0745300-00 Rice plastid 1.82 3.64
Protein Annotations
MapMan:15.5.17Gene3D:3.30.310.150EntrezGene:4349963ProteinID:AAY23268.1EMBL:AB028184ProteinID:ABA91765.1
EMBL:AK063399EMBL:AK102475ProteinID:BAF27764.1ProteinID:BAT12976.1GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009628GO:GO:0009987GO:GO:0045893GO:GO:1901002
InterPro:IPR003441InterPro:IPR036093InterPro:NAC-domInterPro:NAC_dom_sfEnsemblPlantsGene:Os11g0184900EnsemblPlants:Os11t0184900-02
PFAM:PF02365PFscan:PS51005PANTHER:PTHR31719PANTHER:PTHR31719:SF16UniProt:Q53NF7SUPFAM:SSF101941
UniParc:UPI000009E585RefSeq:XP_015617286.1SEG:seg:::
Description
NAC DOMAIN-CONTAINING PROTEIN 5Similar to OsNAC5 protein [imported]-rice. (Os11t0184900-01);NAC-type transcription factor, Regulation of stress-inducible genes, Stress tolerance (Os11t0184900-02)
Coordinates
chr11:-:4299277..4301783
Molecular Weight (calculated)
35524.6 Da
IEP (calculated)
5.449
GRAVY (calculated)
-0.470
Length
329 amino acids
Sequence
(BLAST)
001: MECGGALQLP PGFRFHPTDD ELVMYYLCRK CGGLPLAAPV IAEVDLYKFN PWDLPERAMG GEKEWYFFSP RDRKYPNGQR PNRAAGTGYW KATGADKPVG
101: SPRAVAIKKA LVFYAGKPPK GVKTNWIMHE YRLADVDRSA AARKLSKSSH NALRLDDWVL CRIYNKKGVI ERYDTVDAGE DVKPAAAAAA AKGGRIGGGG
201: GAAAMKVELS DYGFYDQEPE SEMLCFDRSG SADRDSMPRL HTDSSGSEHV LSPSPSPDDF PGGGDHDYAE SQPSGGCGGW PGVDWAAVGD DGFVIDSSLF
301: ELPSPAAFSR AAGDGAAFGD MFTYLQKPF
Best Arabidopsis Sequence Match ( AT1G01720.1 )
(BLAST)
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.