Factsheet for PGSC0003DMT400023917

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g017470.1.1	Tomato	nucleus	94.16	94.16
PGSC0003DMT400045294	Potato	nucleus	72.51	71.28
KRH17977	Soybean	nucleus	65.64	71.27
VIT_18s0001g02300.t01	Wine grape	nucleus	72.85	70.9
KRH16387	Soybean	nucleus	67.01	69.64
KRH64668	Soybean	nucleus	71.48	69.33
KRH53247	Soybean	nucleus	70.1	68.23
AT1G77450.1	Thale cress	cytosol, nucleus, plastid	57.04	65.61
GSMUA_Achr10P...	Banana	nucleus	57.39	65.49
Bra008309.1-P	Field mustard	cytosol, nucleus, plastid	57.73	64.62
CDY38346	Canola	cytosol, nucleus, plastid	57.73	64.62
CDY40894	Canola	nucleus	57.73	64.62
GSMUA_Achr6P18720_001	Banana	nucleus	59.79	63.5
KXG33829	Sorghum	nucleus	62.89	62.89
Zm00001d042609_P001	Maize	cytosol, mitochondrion, nucleus	62.54	61.69
GSMUA_Achr6P25380_001	Banana	nucleus	57.73	61.31
Os01t0884300-01	Rice	nucleus	63.23	60.73
GSMUA_Achr7P23250_001	Banana	nucleus	55.67	60.45
TraesCS3D01G401200.1	Wheat	nucleus	61.86	60.2
TraesCS3A01G406000.1	Wheat	nucleus	61.86	60.2
TraesCS3B01G439600.1	Wheat	nucleus	61.51	60.07
PGSC0003DMT400082472	Potato	nucleus	62.2	59.74
HORVU1Hr1G063740.1	Barley	nucleus	59.45	59.04
TraesCS1A01G263700.1	Wheat	nucleus	59.45	59.04
CDX84050	Canola	nucleus	38.49	58.03
TraesCS1D01G263800.1	Wheat	nucleus	59.79	58.0
GSMUA_Achr6P17720_001	Banana	nucleus	57.39	57.59
TraesCS1B01G274300.1	Wheat	nucleus	59.45	57.48
KXG22031	Sorghum	nucleus	59.11	50.44
Zm00001d038221_P001	Maize	plastid	58.42	50.15
GSMUA_Achr3P18990_001	Banana	plastid	56.36	49.25
Os11t0184900-02	Rice	nucleus	54.98	48.63
HORVU4Hr1G017430.7	Barley	nucleus	53.95	47.29
TraesCS4B01G098200.1	Wheat	nucleus	53.95	47.01
TraesCS4D01G094400.1	Wheat	nucleus	53.95	46.87
TraesCS4A01G219700.1	Wheat	nucleus	53.95	46.87
Zm00001d000112_P001	Maize	nucleus	52.92	42.9
OQU83033	Sorghum	nucleus	52.92	40.1
PGSC0003DMT400047440	Potato	nucleus	37.46	38.65
PGSC0003DMT400007341	Potato	mitochondrion	37.11	38.16
PGSC0003DMT400049664	Potato	nucleus	41.92	35.99
PGSC0003DMT400039670	Potato	nucleus	42.27	35.04
PGSC0003DMT400049665	Potato	nucleus	42.27	34.55
PGSC0003DMT400064428	Potato	nucleus	41.58	34.47
PGSC0003DMT400093822	Potato	nucleus	34.02	33.33
PGSC0003DMT400022365	Potato	cytosol	26.8	31.84
PGSC0003DMT400090327	Potato	cytosol	30.58	31.34
PGSC0003DMT400054407	Potato	nucleus	31.62	29.3
PGSC0003DMT400003082	Potato	nucleus	28.18	29.08
PGSC0003DMT400028190	Potato	nucleus	28.18	28.37
PGSC0003DMT400049124	Potato	nucleus	21.31	24.8
PGSC0003DMT400003343	Potato	nucleus	32.3	23.74
PGSC0003DMT400080307	Potato	nucleus	31.27	23.51
PGSC0003DMT400047021	Potato	nucleus	31.96	23.02
PGSC0003DMT400048237	Potato	nucleus	32.65	19.43

Protein Annotations

EntrezGene:102585728	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009788	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	UniProt:M1AJ57	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
EnsemblPlantsGene:PGSC0003DMG400009245	PGSC:PGSC0003DMG400009245	EnsemblPlants:PGSC0003DMT400023917	PFscan:PS51005	PANTHER:PTHR31719	PANTHER:PTHR31719:SF16
SUPFAM:SSF101941	UniParc:UPI000294EE5D	RefSeq:XP_006351144.1	:	:	:

Description

Nam 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400009245]

Coordinates

chr11:+:8608289..8609720

Molecular Weight (calculated)

33622.8 Da

IEP (calculated)

7.491

GRAVY (calculated)

-0.698

Length

291 amino acids

Sequence
(BLAST)

001: MVELQFPAGF RFHPTDEELV MHYLCRKCAS QPIAVPIIAE IDLYKYNPWD LPDLALYGEK EWYFFSPRDR KYPNGSRPNR AAGNGYWKAT GADKPIGRPK
101: SMGIKKALVF YAGKAPKGEK TNWIMHEYRL AHVDRSARNK NNSLRLDDWV LCRIYNKKGT TEKNQLNIRK MNVEMSPAVS EGDVKPEIMP YSVSTKPSST
201: SYHVYNDFTY FDSSDSLPKL HTDSSCSEHV PSPEFTCEKE VQSEPKVKLN EWEKTALDFP FNYTDATTSE LQSCYEMSPL QDIFMYLQKP F

Best Arabidopsis Sequence Match ( AT1G01720.1 )
(BLAST)

001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY

Arabidopsis Description

NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.