Factsheet for PGSC0003DMT400007341

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005610.2.1	Tomato	nucleus	90.81	93.45
PGSC0003DMT400047440	Potato	nucleus	71.73	71.99
KRH50570	Soybean	nucleus	53.71	65.24
VIT_01s0026g02710.t01	Wine grape	nucleus	63.6	63.83
KRH74907	Soybean	nucleus	61.84	62.72
KRH70773	Soybean	cytosol	61.48	62.37
CDY40930	Canola	cytosol	57.24	60.0
Bra004385.1-P	Field mustard	cytosol	56.89	59.63
CDX95931	Canola	cytosol	56.89	59.63
AT1G69490.1	Thale cress	nucleus	55.83	58.96
KRG89575	Soybean	nucleus	57.24	57.86
GSMUA_Achr7P21770_001	Banana	nucleus	40.64	57.5
CDY07348	Canola	nucleus	54.77	57.2
CDY51500	Canola	nucleus	54.77	56.99
Bra003998.1-P	Field mustard	nucleus	47.0	55.65
HORVU1Hr1G021800.3	Barley	cytosol, nucleus	34.63	53.26
GSMUA_AchrUn_...	Banana	nucleus	48.41	41.9
GSMUA_Achr4P02380_001	Banana	nucleus	47.35	40.12
GSMUA_Achr10P...	Banana	nucleus	42.76	40.07
GSMUA_Achr6P32320_001	Banana	nucleus	47.7	39.13
PGSC0003DMT400045294	Potato	nucleus	39.93	38.18
PGSC0003DMT400023917	Potato	nucleus	38.16	37.11
TraesCS4B01G173600.1	Wheat	nucleus	45.23	36.99
HORVU3Hr1G014140.3	Barley	nucleus	45.23	36.68
Os01t0104200-00	Rice	nucleus	43.82	36.58
TraesCS4A01G131000.1	Wheat	nucleus	45.58	36.44
TraesCS4D01G175700.1	Wheat	nucleus	45.94	36.41
HORVU4Hr1G051290.1	Barley	nucleus	45.23	36.06
TraesCS3D01G078900.1	Wheat	nucleus	44.88	35.98
TraesCS3B01G093300.1	Wheat	nucleus	44.88	35.98
PGSC0003DMT400082472	Potato	nucleus	38.52	35.97
TraesCS3A01G078400.1	Wheat	nucleus	44.52	35.69
TraesCS2A01G101900.1	Wheat	nucleus	43.46	35.34
TraesCS2A01G102000.1	Wheat	nucleus	44.52	35.29
TraesCS2D01G101400.1	Wheat	nucleus	44.17	35.21
PGSC0003DMT400049664	Potato	nucleus	41.7	34.81
GSMUA_Achr3P18010_001	Banana	nucleus	45.23	34.78
PGSC0003DMT400064428	Potato	nucleus	43.11	34.76
TraesCS2B01G119000.1	Wheat	nucleus	42.76	34.57
PGSC0003DMT400049665	Potato	nucleus	43.46	34.55
TraesCS2B01G119100.1	Wheat	nucleus	43.46	34.55
PGSC0003DMT400039670	Potato	nucleus	42.4	34.19
PGSC0003DMT400022365	Potato	cytosol	28.98	33.47
PGSC0003DMT400093822	Potato	nucleus	34.98	33.33
EER92326	Sorghum	nucleus	44.52	33.16
Zm00001d028999_P001	Maize	nucleus	43.46	32.98
Os03t0327800-01	Rice	nucleus	44.88	32.4
GSMUA_Achr9P04960_001	Banana	nucleus	45.23	32.24
KXG32136	Sorghum	plastid	42.76	31.84
EER99924	Sorghum	cytosol, nucleus, plastid	43.46	31.7
HORVU2Hr1G017470.1	Barley	nucleus	43.11	31.69
Zm00001d008399_P001	Maize	nucleus	42.4	30.15
TraesCS2D01G101300.1	Wheat	nucleus	33.22	29.84
PGSC0003DMT400090327	Potato	cytosol	29.68	29.58
PGSC0003DMT400054407	Potato	nucleus	32.51	29.3
PGSC0003DMT400003082	Potato	nucleus	28.98	29.08
PGSC0003DMT400028190	Potato	nucleus	29.68	29.07
PGSC0003DMT400080307	Potato	nucleus	35.69	26.1
Zm00001d022424_P001	Maize	nucleus	30.04	25.76
PGSC0003DMT400003343	Potato	nucleus	34.28	24.49
PGSC0003DMT400049124	Potato	nucleus	20.85	23.6
PGSC0003DMT400047021	Potato	nucleus	31.1	21.78
HORVU0Hr1G026330.2	Barley	nucleus	31.8	21.63
HORVU2Hr1G017460.4	Barley	nucleus	31.8	21.43
PGSC0003DMT400048237	Potato	nucleus	34.63	20.04

Protein Annotations

EntrezGene:102591523	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	UniProt:M0ZSU1	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
EnsemblPlantsGene:PGSC0003DMG400002824	PGSC:PGSC0003DMG400002824	EnsemblPlants:PGSC0003DMT400007341	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF101
SUPFAM:SSF101941	UniParc:UPI0002963787	RefSeq:XP_006344264.1	:	:	:

Description

NAC domain protein NAC2 [Source:PGSC_GENE;Acc:PGSC0003DMG400002824]

Coordinates

chr4:+:244971..247450

Molecular Weight (calculated)

32722.0 Da

IEP (calculated)

9.136

GRAVY (calculated)

-0.641

Length

283 amino acids

Sequence
(BLAST)

001: MIGKNNSNHL PPGFRFHPTD EELIIYYLRN QATSRPCPSS IIPEVDIYKF DPWELPEKAE FGEKEWYFFT PRDRKYPNGV RPNRAAVSGY WKATGTDKAI
101: YSGTKYVGIK KALVFYKGKP PKGIKTDWIM HEYRLSESRT QPITRPNGSM RLDDWVLCRI YKKKNLGRAI EMMKVEEDTQ QPQIMSVINP SEVVASNGQQ
201: TMKLPRTCSL SHLLEMDYFG SISQLFDDNN SYNTISQNNT LMTNGYVVPH QAMEIFQLGE VSQNNSNSFL KQPIFMNPSF QFQ

Best Arabidopsis Sequence Match ( AT1G69490.1 )
(BLAST)

001: MEVTSQSTLP PGFRFHPTDE ELIVYYLRNQ TMSKPCPVSI IPEVDIYKFD PWQLPEKTEF GENEWYFFSP RERKYPNGVR PNRAAVSGYW KATGTDKAIH
101: SGSSNVGVKK ALVFYKGRPP KGIKTDWIMH EYRLHDSRKA STKRNGSMRL DEWVLCRIYK KRGASKLLNE QEGFMDEVLM EDETKVVVNE AERRTEEEIM
201: MMTSMKLPRT CSLAHLLEMD YMGPVSHIDN FSQFDHLHQP DSESSWFGDL QFNQDEILNH HRQAMFKF

Arabidopsis Description

NAC029NAP [Source:UniProtKB/TrEMBL;Acc:A0A178W8K0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.