Factsheet for PGSC0003DMT400080307

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g007550.1.1	Tomato	nucleus	97.42	96.67
VIT_01s0026g02360.t01	Wine grape	nucleus	59.95	57.86
GSMUA_Achr6P02680_001	Banana	nucleus	54.52	54.81
KRG99080	Soybean	nucleus	56.07	54.11
KRH45921	Soybean	nucleus	57.11	53.51
PGSC0003DMT400003343	Potato	nucleus	52.45	51.26
PGSC0003DMT400090327	Potato	cytosol	29.72	40.49
PGSC0003DMT400003082	Potato	nucleus	28.17	38.65
PGSC0003DMT400054407	Potato	nucleus	30.49	37.58
PGSC0003DMT400022365	Potato	cytosol	23.26	36.73
PGSC0003DMT400007341	Potato	mitochondrion	26.1	35.69
PGSC0003DMT400047440	Potato	nucleus	24.81	34.04
PGSC0003DMT400028190	Potato	nucleus	24.81	33.22
PGSC0003DMT400049124	Potato	nucleus	20.67	32.0
PGSC0003DMT400023917	Potato	nucleus	23.51	31.27
PGSC0003DMT400045294	Potato	nucleus	23.26	30.41
PGSC0003DMT400082472	Potato	nucleus	22.74	29.04
PGSC0003DMT400049664	Potato	nucleus	25.06	28.61
PGSC0003DMT400049665	Potato	nucleus	26.1	28.37
PGSC0003DMT400093822	Potato	nucleus	21.45	27.95
PGSC0003DMT400039670	Potato	nucleus	25.06	27.64
PGSC0003DMT400064428	Potato	nucleus	25.06	27.64
PGSC0003DMT400047021	Potato	nucleus	27.39	26.24
CDY16201	Canola	plastid	16.02	23.57
CDY54324	Canola	extracellular	16.28	22.74
PGSC0003DMT400048237	Potato	nucleus	22.22	17.59

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:ABO92972	ProteinID:ABO92972.1	EMBL:EF514212	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	UniProt:M1D3A9	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400031266	PGSC:PGSC0003DMG400031266	EnsemblPlants:PGSC0003DMT400080307	PFscan:PS51005
PANTHER:PTHR44574	PANTHER:PTHR44574:SF1	SUPFAM:SSF101941	UniParc:UPI000294FE12	SEG:seg	:

Description

No apical meristem (NAM) [Source:PGSC_GENE;Acc:PGSC0003DMG400031266]

Coordinates

chr5:-:4946134..4948792

Molecular Weight (calculated)

43843.6 Da

IEP (calculated)

7.600

GRAVY (calculated)

-0.551

Length

387 amino acids

Sequence
(BLAST)

001: MDEVMLPGFR FHPTDEELVG FYLRRKVQQK PISIELIKQL DIYKYDPWDL PKLAAVGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG
101: SKCIGLKKSL VFYKGRAAKG IKTDWMMHEF RLPSITDSTA PKRFLDKHIP PNDSWAICRI FKKANSNAHR ALSHSWVSPP QVLPQNNTTS HDFLTSSHFT
201: NNSNEMSSFI HKTSTSPIQF NDLLQNSSNN NMSSSFTTLD LPLYKTLNSM SNHNNDPITS YTFSSSCVDN MNNIDASSLL LNMSSSIFGD YSIALPENME
301: GGGVHDDTTT TTLKEANNVI INNMEHMEEL QWGNVVRSNN IGVIPLMNNF PLNMAADAWK TNLLWDSSSP CPSSEMSTSY STNKCYT

Best Arabidopsis Sequence Match ( AT1G26870.1 )
(BLAST)

001: MGDRNNDGDQ KMEDVLLPGF RFHPTDEELV SFYLKRKVQH NPLSIELIRQ LDIYKYDPWD LPKFAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT
101: GTDRPIYSSE GNKCIGLKKS LVFYKGRAAK GVKTDWMMHE FRLPSLSEPS PPSKRFFDSP VSPNDSWAIC RIFKKTNTTT LRALSHSFVS SLPPETSTDT
201: MSNQKQSNTY HFSSDKILKP SSHFQFHHEN MNTPKTSNST TPSVPTISPF SYLDFTSYDK PTNVFNPVSC LDQQYLTNLF LATQETQPQF PRLPSSNEIP
301: SFLLNTSSDS TFLGEFTSHI DLSAVLAQEQ CPPLVSLPQE YQETGFEGNG IMKNMRGSNE DHLGDHCDTL RFDDFTSTIN ENHRHHQDLK QNMTLLESYY
401: SSLSSINSDL PACFSSTT

Arabidopsis Description

FEZProtein FEZ [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.