Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g021090.2.1 | Tomato | nucleus | 89.72 | 90.68 |
| PGSC0003DMT400049124 | Potato | nucleus | 48.23 | 54.4 |
| VIT_12s0028g00860.t01 | Wine grape | nucleus | 53.19 | 50.34 |
| GSMUA_Achr10P... | Banana | cytosol | 45.74 | 48.31 |
| VIT_19s0027g00880.t01 | Wine grape | nucleus | 36.52 | 48.13 |
| PGSC0003DMT400090327 | Potato | cytosol | 47.87 | 47.54 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 41.84 | 47.2 |
| VIT_19s0027g00870.t01 | Wine grape | nucleus | 46.1 | 46.93 |
| Zm00001d007850_P001 | Maize | nucleus | 41.13 | 46.22 |
| VIT_19s0027g00840.t01 | Wine grape | nucleus | 46.1 | 45.77 |
| GSMUA_Achr9P10040_001 | Banana | nucleus | 49.29 | 45.72 |
| VIT_19s0027g00860.t01 | Wine grape | nucleus | 44.68 | 45.65 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 42.2 | 45.42 |
| VIT_19s0027g00910.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 45.39 | 43.39 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 46.81 | 43.0 |
| PGSC0003DMT400054407 | Potato | nucleus | 47.52 | 42.68 |
| GSMUA_Achr4P32010_001 | Banana | nucleus | 43.26 | 42.51 |
| EES17466 | Sorghum | nucleus | 41.13 | 38.16 |
| TraesCS5A01G411900.1 | Wheat | nucleus | 46.1 | 37.9 |
| TraesCS5D01G421100.1 | Wheat | nucleus | 45.74 | 37.83 |
| HORVU5Hr1G099470.2 | Barley | cytosol | 44.68 | 37.39 |
| HORVU5Hr1G099390.2 | Barley | nucleus | 38.3 | 37.37 |
| Zm00001d013151_P001 | Maize | cytosol | 44.33 | 37.2 |
| Zm00001d031164_P001 | Maize | nucleus | 40.07 | 36.93 |
| Os03t0777000-01 | Rice | nucleus | 47.16 | 36.74 |
| EER95852 | Sorghum | nucleus | 44.68 | 36.73 |
| TraesCS5B01G415700.1 | Wheat | nucleus | 45.04 | 36.29 |
| TraesCS5B01G415600.1 | Wheat | nucleus | 44.68 | 35.9 |
| TraesCS4B01G384700.1 | Wheat | cytoskeleton, cytosol, nucleus | 43.26 | 35.88 |
| Zm00001d018773_P001 | Maize | nucleus | 45.39 | 35.75 |
| EER93360 | Sorghum | nucleus | 46.81 | 35.68 |
| HORVU5Hr1G099460.1 | Barley | nucleus | 43.62 | 35.55 |
| TraesCS5A01G411800.1 | Wheat | nucleus | 44.33 | 35.51 |
| TraesCS5D01G420800.1 | Wheat | nucleus | 45.74 | 35.44 |
| Zm00001d034277_P001 | Maize | cytosol, mitochondrion, nucleus | 46.1 | 35.33 |
| TraesCS5A01G411700.1 | Wheat | nucleus | 46.1 | 34.48 |
| TraesCS5B01G415400.1 | Wheat | nucleus | 45.74 | 34.22 |
| PGSC0003DMT400022365 | Potato | cytosol | 29.08 | 33.47 |
| TraesCS5D01G421000.1 | Wheat | nucleus | 45.04 | 33.07 |
| PGSC0003DMT400007341 | Potato | mitochondrion | 29.08 | 28.98 |
| PGSC0003DMT400023917 | Potato | nucleus | 29.08 | 28.18 |
| PGSC0003DMT400080307 | Potato | nucleus | 38.65 | 28.17 |
| PGSC0003DMT400047440 | Potato | nucleus | 28.01 | 28.01 |
| PGSC0003DMT400003343 | Potato | nucleus | 39.01 | 27.78 |
| PGSC0003DMT400045294 | Potato | nucleus | 29.08 | 27.7 |
| PGSC0003DMT400028190 | Potato | nucleus | 28.37 | 27.68 |
| PGSC0003DMT400082472 | Potato | nucleus | 28.72 | 26.73 |
| PGSC0003DMT400049664 | Potato | nucleus | 29.79 | 24.78 |
| PGSC0003DMT400093822 | Potato | nucleus | 25.53 | 24.24 |
| PGSC0003DMT400047021 | Potato | nucleus | 34.4 | 24.01 |
| PGSC0003DMT400064428 | Potato | nucleus | 28.37 | 22.79 |
| PGSC0003DMT400039670 | Potato | nucleus | 27.66 | 22.22 |
| PGSC0003DMT400049665 | Potato | nucleus | 28.01 | 22.19 |
| PGSC0003DMT400048237 | Potato | nucleus | 26.6 | 15.34 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M0ZL44 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 |
| EnsemblPlantsGene:PGSC0003DMG400001223 | PGSC:PGSC0003DMG400001223 | EnsemblPlants:PGSC0003DMT400003082 | PFscan:PS51005 | PANTHER:PTHR44543 | PANTHER:PTHR44543:SF2 |
| SUPFAM:SSF101941 | UniParc:UPI000296E861 | SEG:seg | : | : | : |
Description
NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001223]
Coordinates
chr5:+:41532918..41538650
Molecular Weight (calculated)
33010.7 Da
IEP (calculated)
7.263
GRAVY (calculated)
-0.828
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEIKTMSK EGNEEDVILP GFRFHPTDEE LVGFYLRRKV ENKRINMELI KHIDIYKYDP WDLPKLVEDK EMYYFCMRGR KYKNSVRPNR VTKSGFWKAT
101: GIDKPVYSST TQCIIIGLKK CLVYYRGSAG KGTKTDWMMH EFRLPPTSNT NHQAEVWTLC RIFKRSTSTY KRSSYSTQEV KHLLGDASSK ACSMESDENS
201: TDHDHSNSFK DISFQQQNYN NYEAQMDEIR NQQNLISHDS TFPSSSSISF WNTYSTQEEY LFGDHGNKWD DLKSIVDLAT MM
101: GIDKPVYSST TQCIIIGLKK CLVYYRGSAG KGTKTDWMMH EFRLPPTSNT NHQAEVWTLC RIFKRSTSTY KRSSYSTQEV KHLLGDASSK ACSMESDENS
201: TDHDHSNSFK DISFQQQNYN NYEAQMDEIR NQQNLISHDS TFPSSSSISF WNTYSTQEEY LFGDHGNKWD DLKSIVDLAT MM
001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
Arabidopsis Description
JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.