Factsheet for VIT_19s0027g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g00870.t01	Wine grape	nucleus	76.76	78.7
VIT_19s0027g00860.t01	Wine grape	nucleus	76.06	78.26
VIT_19s0027g00880.t01	Wine grape	nucleus	54.23	71.96
VIT_19s0027g00910.t01	Wine grape	cytoskeleton, cytosol, nucleus	64.79	62.37
VIT_12s0028g00860.t01	Wine grape	nucleus	59.86	57.05
GSMUA_Achr7P00860_001	Banana	nucleus	46.13	50.0
GSMUA_Achr4P32010_001	Banana	nucleus	49.65	49.13
GSMUA_Achr10P...	Banana	cytosol	45.77	48.69
GSMUA_Achr4P23030_001	Banana	nucleus	41.55	47.2
GSMUA_Achr5P02170_001	Banana	nucleus	50.35	46.58
PGSC0003DMT400003082	Potato	nucleus	45.77	46.1
GSMUA_Achr9P10040_001	Banana	nucleus	49.3	46.05
Solyc05g021090.2.1	Tomato	nucleus	45.07	45.88
Zm00001d007850_P001	Maize	nucleus	39.79	45.02
HORVU5Hr1G099470.2	Barley	cytosol	48.59	40.95
TraesCS5A01G411900.1	Wheat	nucleus	48.24	39.94
EES17466	Sorghum	nucleus	42.61	39.8
TraesCS5D01G421100.1	Wheat	nucleus	47.54	39.59
Zm00001d013151_P001	Maize	cytosol	46.13	38.99
TraesCS5B01G415700.1	Wheat	nucleus	47.54	38.57
TraesCS4B01G384700.1	Wheat	cytoskeleton, cytosol, nucleus	46.13	38.53
TraesCS5A01G411800.1	Wheat	nucleus	47.54	38.35
Zm00001d031164_P001	Maize	nucleus	41.2	38.24
TraesCS5B01G415600.1	Wheat	nucleus	47.18	38.18
HORVU5Hr1G099390.2	Barley	nucleus	38.73	38.06
TraesCS5D01G420800.1	Wheat	nucleus	48.24	37.64
HORVU5Hr1G099460.1	Barley	nucleus	45.77	37.57
EER95852	Sorghum	nucleus	45.07	37.32
Os03t0777000-01	Rice	nucleus	47.54	37.29
EER93360	Sorghum	nucleus	48.24	37.03
Zm00001d034277_P001	Maize	cytosol, mitochondrion, nucleus	47.18	36.41
TraesCS5A01G411700.1	Wheat	nucleus	47.89	36.07
TraesCS5B01G415400.1	Wheat	nucleus	47.89	36.07
Zm00001d018773_P001	Maize	nucleus	44.72	35.47
VIT_06s0004g02340.t01	Wine grape	nucleus	22.18	35.0
TraesCS5D01G421000.1	Wheat	nucleus	47.18	34.9
VIT_14s0108g00860.t01	Wine grape	nucleus	41.2	33.14
VIT_07s0031g02610.t01	Wine grape	nucleus	30.63	29.59
VIT_01s0026g02710.t01	Wine grape	nucleus	28.52	28.72
VIT_01s0026g02360.t01	Wine grape	nucleus	40.14	28.43
VIT_06s0004g00020.t01	Wine grape	nucleus	28.87	27.61
VIT_04s0008g00150.t01	Wine grape	nucleus	27.11	27.6
VIT_18s0001g02300.t01	Wine grape	nucleus	28.87	27.42
VIT_19s0014g03290.t01	Wine grape	nucleus	31.69	27.03
VIT_03s0038g03410.t01	Wine grape	nucleus	26.41	26.88
VIT_00s0375g00040.t01	Wine grape	nucleus	28.87	24.77
VIT_19s0014g03300.t01	Wine grape	nucleus	29.23	23.51
VIT_08s0007g07670.t01	Wine grape	nucleus	27.11	22.99
VIT_08s0040g02110.t01	Wine grape	nucleus	27.46	22.81
VIT_06s0004g03080.t01	Wine grape	nucleus	27.46	21.67
VIT_12s0035g02020.t01	Wine grape	nucleus	32.39	20.18

Protein Annotations

EntrezGene:100249286	wikigene:100249286	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CBI21757	ProteinID:CBI21757.3
UniProt:D7SWV7	EMBL:FN595234	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	EntrezGene:LOC100249286	wikigene:LOC100249286	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR44543	PANTHER:PTHR44543:SF2	SUPFAM:SSF101941	UniParc:UPI00015CA382	ArrayExpress:VIT_19s0027g00840
EnsemblPlantsGene:VIT_19s0027g00840	EnsemblPlants:VIT_19s0027g00840.t01	RefSeq:XP_002265956	RefSeq:XP_002265956.2	RefSeq:XP_002265956.3	:

Description

No Description!

Coordinates

chr19:+:20170778..20172315

Molecular Weight (calculated)

32933.7 Da

IEP (calculated)

7.530

GRAVY (calculated)

-0.752

Length

284 amino acids

Sequence
(BLAST)

001: MIKSSMDATK DDDQVVLPGF RFHPTDEELV SFYLQRKIEK KLISIEFIKQ IDIYKYEPWD LAKNINTLTD KEWYFFCKRG RKYRNSIRPN RVTRSGFWKA
101: TGIDKPIYSN NGEGHDCIGL KKSLVYYRGS AGKGTKTDWM MHEFRLPANQ KNTNLPNAKA ADQEAEIWTL CRIFKRDVSY RKYTPDWRES SARHNPVNAR
201: TKTCDADSEN LEYYNISFGA SAALDDEKKP VVGHSMDGRI QLHVGSEPES CSTVLSEEAR EFFTNGNWDE IVSAMDFAFD PYHL

Best Arabidopsis Sequence Match ( AT2G43000.1 )
(BLAST)

001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP

Arabidopsis Description

JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.