Factsheet for VIT_19s0027g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g00860.t01	Wine grape	nucleus	92.06	92.39
VIT_19s0027g00840.t01	Wine grape	nucleus	78.7	76.76
VIT_19s0027g00880.t01	Wine grape	nucleus	53.79	69.63
VIT_19s0027g00910.t01	Wine grape	cytoskeleton, cytosol, nucleus	65.7	61.69
VIT_12s0028g00860.t01	Wine grape	nucleus	58.84	54.7
GSMUA_Achr7P00860_001	Banana	nucleus	48.01	50.76
GSMUA_Achr4P32010_001	Banana	nucleus	51.26	49.48
GSMUA_Achr4P23030_001	Banana	nucleus	44.04	48.8
GSMUA_Achr10P...	Banana	cytosol	46.93	48.69
Zm00001d007850_P001	Maize	nucleus	42.96	47.41
GSMUA_Achr5P02170_001	Banana	nucleus	51.26	46.25
PGSC0003DMT400003082	Potato	nucleus	46.93	46.1
GSMUA_Achr9P10040_001	Banana	nucleus	50.54	46.05
Solyc05g021090.2.1	Tomato	nucleus	45.85	45.52
HORVU5Hr1G099470.2	Barley	cytosol	51.62	42.43
Zm00001d013151_P001	Maize	cytosol	50.54	41.67
TraesCS5A01G411900.1	Wheat	nucleus	51.26	41.4
TraesCS5D01G421100.1	Wheat	nucleus	50.54	41.06
TraesCS4B01G384700.1	Wheat	cytoskeleton, cytosol, nucleus	49.46	40.29
TraesCS5A01G411800.1	Wheat	nucleus	50.9	40.06
TraesCS5B01G415700.1	Wheat	nucleus	50.54	40.0
TraesCS5B01G415600.1	Wheat	nucleus	50.54	39.89
EER95852	Sorghum	nucleus	49.1	39.65
EES17466	Sorghum	nucleus	43.32	39.47
EER93360	Sorghum	nucleus	52.71	39.46
TraesCS5D01G420800.1	Wheat	nucleus	51.62	39.29
HORVU5Hr1G099460.1	Barley	nucleus	48.74	39.02
Os03t0777000-01	Rice	nucleus	50.9	38.95
HORVU5Hr1G099390.2	Barley	nucleus	40.43	38.75
Zm00001d031164_P001	Maize	nucleus	42.24	38.24
Zm00001d034277_P001	Maize	cytosol, mitochondrion, nucleus	50.54	38.04
TraesCS5A01G411700.1	Wheat	nucleus	51.62	37.93
Zm00001d018773_P001	Maize	nucleus	48.74	37.71
TraesCS5B01G415400.1	Wheat	nucleus	50.9	37.4
TraesCS5D01G421000.1	Wheat	nucleus	50.9	36.72
VIT_06s0004g02340.t01	Wine grape	nucleus	23.47	36.11
VIT_14s0108g00860.t01	Wine grape	nucleus	41.88	32.86
VIT_07s0031g02610.t01	Wine grape	nucleus	31.41	29.59
VIT_01s0026g02360.t01	Wine grape	nucleus	42.6	29.43
VIT_06s0004g00020.t01	Wine grape	nucleus	31.05	28.96
VIT_01s0026g02710.t01	Wine grape	nucleus	29.24	28.72
VIT_18s0001g02300.t01	Wine grape	nucleus	29.6	27.42
VIT_04s0008g00150.t01	Wine grape	nucleus	27.44	27.24
VIT_03s0038g03410.t01	Wine grape	nucleus	27.44	27.24
VIT_19s0014g03290.t01	Wine grape	nucleus	32.13	26.73
VIT_00s0375g00040.t01	Wine grape	nucleus	31.05	25.98
VIT_19s0014g03300.t01	Wine grape	nucleus	30.69	24.08
VIT_08s0040g02110.t01	Wine grape	nucleus	28.88	23.39
VIT_08s0007g07670.t01	Wine grape	nucleus	28.16	23.28
VIT_06s0004g03080.t01	Wine grape	nucleus	27.8	21.39
VIT_12s0035g02020.t01	Wine grape	nucleus	33.94	20.61

Protein Annotations

EntrezGene:100262877	wikigene:100262877	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:AM448624	ProteinID:CAN72061
ProteinID:CAN72061.1	ProteinID:CBI21755	ProteinID:CBI21755.3	UniProt:D7SWV5	EMBL:FN595234	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100262877	wikigene:LOC100262877
InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR44543	SUPFAM:SSF101941
UniParc:UPI00015CA37F	ArrayExpress:VIT_19s0027g00870	EnsemblPlantsGene:VIT_19s0027g00870	EnsemblPlants:VIT_19s0027g00870.t01	RefSeq:XP_002265838	RefSeq:XP_002265838.2

Description

No Description!

Coordinates

chr19:+:20230675..20232220

Molecular Weight (calculated)

32288.9 Da

IEP (calculated)

7.900

GRAVY (calculated)

-0.820

Length

277 amino acids

Sequence
(BLAST)

001: MDATMDDEQV VLPGFRFHPT DEELVSFYLR RKIEKKPISF ELIKQTDIYK YDPWDLPKNS SVTDKEWYFF CKRGRKYRNS IRPNRVTGSG FWKATGIDKP
101: IYSVQGRAHD CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PADQKNTTPH SATAADEEVE IWTLCRIFKR NVSYRKSTPD WRETSAKRKP TNSRPKTGNM
201: DSENWEGYIS FGAPEALDNE KKLFVGHNMN ERNQFHVVSE PESCSSVLSD EAREFLVHGN WDEIVPAMDC AFDPYYF

Best Arabidopsis Sequence Match ( AT2G43000.1 )
(BLAST)

001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP

Arabidopsis Description

JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.