Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 55.05 | 59.18 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 63.07 | 58.96 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 50.87 | 55.73 |
| GSMUA_Achr9P10040_001 | Banana | nucleus | 58.54 | 55.26 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 47.39 | 54.4 |
| VIT_19s0027g00880.t01 | Wine grape | nucleus | 40.07 | 53.74 |
| VIT_12s0028g00860.t01 | Wine grape | nucleus | 54.36 | 52.35 |
| VIT_19s0027g00860.t01 | Wine grape | nucleus | 49.83 | 51.81 |
| VIT_19s0027g00870.t01 | Wine grape | nucleus | 49.48 | 51.26 |
| AT2G43000.1 | Thale cress | nucleus | 47.74 | 49.82 |
| VIT_19s0027g00840.t01 | Wine grape | nucleus | 49.13 | 49.65 |
| Bra000282.1-P | Field mustard | nucleus | 45.99 | 48.53 |
| CDY14865 | Canola | nucleus | 46.34 | 48.01 |
| CDY30373 | Canola | nucleus | 46.34 | 48.01 |
| Bra037743.1-P | Field mustard | nucleus | 46.34 | 48.01 |
| CDY53654 | Canola | nucleus | 46.34 | 47.67 |
| CDY55499 | Canola | nucleus | 46.34 | 47.67 |
| Bra004736.1-P | Field mustard | nucleus | 46.34 | 47.5 |
| EES17466 | Sorghum | nucleus | 49.83 | 47.04 |
| PGSC0003DMT400090327 | Potato | cytosol | 45.64 | 46.13 |
| KRG98971 | Soybean | nucleus | 48.78 | 46.05 |
| KRH13702 | Soybean | nucleus | 50.87 | 45.91 |
| VIT_19s0027g00910.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 47.04 | 45.76 |
| KRH46012 | Soybean | nucleus | 48.08 | 45.39 |
| KRH73618 | Soybean | cytosol | 50.52 | 45.31 |
| KRH14512 | Soybean | nucleus | 50.87 | 44.79 |
| PGSC0003DMT400054407 | Potato | nucleus | 48.43 | 44.27 |
| Zm00001d031164_P001 | Maize | nucleus | 47.04 | 44.12 |
| CDY43391 | Canola | nucleus | 45.3 | 44.07 |
| CDY64562 | Canola | nucleus | 44.95 | 43.88 |
| Solyc02g069960.2.1 | Tomato | nucleus | 47.39 | 43.87 |
| Solyc05g021090.2.1 | Tomato | nucleus | 42.51 | 43.73 |
| PGSC0003DMT400003082 | Potato | nucleus | 42.51 | 43.26 |
| CDY24238 | Canola | nucleus | 45.99 | 43.0 |
| CDX82569 | Canola | nucleus | 44.95 | 42.72 |
| Bra039353.1-P | Field mustard | nucleus | 45.64 | 42.67 |
| AT3G12910.1 | Thale cress | nucleus | 44.95 | 42.57 |
| Solyc07g045030.2.1 | Tomato | nucleus | 47.04 | 40.79 |
| CDY60122 | Canola | nucleus | 45.99 | 40.37 |
| Bra034719.1-P | Field mustard | nucleus | 45.64 | 40.06 |
| GSMUA_Achr7P21770_001 | Banana | nucleus | 27.87 | 40.0 |
| PGSC0003DMT400049124 | Potato | nucleus | 32.4 | 37.2 |
| CDY23551 | Canola | nucleus | 45.64 | 34.93 |
| GSMUA_Achr4P02390_001 | Banana | nucleus | 29.27 | 31.82 |
| GSMUA_Achr10P... | Banana | nucleus | 27.87 | 31.37 |
| GSMUA_Achr5P19060_001 | Banana | nucleus | 26.13 | 30.74 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.87 | 30.65 |
| GSMUA_Achr5P17060_001 | Banana | nucleus | 29.97 | 30.5 |
| GSMUA_Achr11P... | Banana | nucleus | 27.18 | 29.77 |
| GSMUA_Achr5P07590_001 | Banana | nucleus | 29.97 | 29.66 |
| GSMUA_Achr6P32330_001 | Banana | cytosol | 27.87 | 29.63 |
| GSMUA_Achr7P21780_001 | Banana | nucleus | 30.66 | 29.53 |
| GSMUA_Achr1P02710_001 | Banana | nucleus | 27.87 | 29.41 |
| GSMUA_Achr6P18720_001 | Banana | nucleus | 27.87 | 29.2 |
| GSMUA_Achr7P23250_001 | Banana | nucleus | 27.18 | 29.1 |
| GSMUA_Achr4P10310_001 | Banana | nucleus | 29.27 | 28.67 |
| GSMUA_Achr6P25380_001 | Banana | nucleus | 26.83 | 28.1 |
| GSMUA_Achr6P02680_001 | Banana | nucleus | 36.93 | 27.53 |
| GSMUA_Achr3P14720_001 | Banana | nucleus | 27.18 | 26.99 |
| GSMUA_Achr6P17720_001 | Banana | nucleus | 27.18 | 26.9 |
| GSMUA_Achr3P00560_001 | Banana | nucleus | 26.13 | 26.88 |
| GSMUA_Achr11P... | Banana | nucleus | 31.36 | 26.87 |
| GSMUA_Achr11P... | Banana | nucleus | 29.62 | 26.73 |
| GSMUA_Achr7P04030_001 | Banana | nucleus | 26.13 | 26.32 |
| CDY42810 | Canola | nucleus | 46.69 | 26.27 |
| CDX83510 | Canola | nucleus | 46.69 | 26.27 |
| GSMUA_Achr10P... | Banana | cytosol | 27.53 | 25.99 |
| GSMUA_Achr10P... | Banana | cytosol | 37.98 | 25.83 |
| GSMUA_Achr10P... | Banana | nucleus | 27.18 | 25.83 |
| GSMUA_Achr10P... | Banana | nucleus | 30.31 | 25.66 |
| GSMUA_Achr7P23650_001 | Banana | nucleus | 31.01 | 25.57 |
| GSMUA_Achr4P02380_001 | Banana | nucleus | 29.62 | 25.45 |
| GSMUA_Achr9P19520_001 | Banana | nucleus | 28.57 | 25.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.57 | 25.08 |
| GSMUA_Achr10P... | Banana | nucleus | 28.22 | 24.77 |
| GSMUA_Achr3P21690_001 | Banana | nucleus | 30.66 | 24.72 |
| GSMUA_Achr6P32320_001 | Banana | nucleus | 28.92 | 24.06 |
| GSMUA_Achr3P18990_001 | Banana | plastid | 27.53 | 23.72 |
| GSMUA_Achr1P08860_001 | Banana | nucleus | 29.62 | 23.68 |
| GSMUA_Achr3P18010_001 | Banana | nucleus | 29.97 | 23.37 |
| GSMUA_Achr1P18110_001 | Banana | cytosol, nucleus, plastid | 17.07 | 22.58 |
| GSMUA_Achr9P04960_001 | Banana | nucleus | 28.22 | 20.4 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G32010_001 |
| EnsemblPlants:GSMUA_Achr4P32010_001 | EnsemblPlants:GSMUA_Achr4T32010_001 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M0STW3 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR44543 | SUPFAM:SSF101941 | UniParc:UPI00029504F8 |
| SEG:seg | : | : | : | : | : |
Description
NAC domain-containing protein 42 [Source:GMGC_GENE;Acc:GSMUA_Achr4G32010_001]
Coordinates
chr4:-:28963729..28964725
Molecular Weight (calculated)
32778.2 Da
IEP (calculated)
6.845
GRAVY (calculated)
-0.771
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEMVNKREE EEEDVVLPGF RFHPTDEELV GFYLRRKVEK KTPSIDIIKE MDIYKHDPWD LPRVVAAGDE SSYFFCRRGR KYRNSIRPNR VTGSGFWKAT
101: GIDKPIDSSG DCVGLKKSLV YYRGSAGKGT KTDWMMHEFR LPSGDSSIAD DTRSTQEAEI WTICRIFKRS ASYRKQSSKW KASSTHKRAP ADSSCVTSSF
201: DCDNGSDYRC CASSGYSCSQ EHNQVHGWQC NSISQPPSLY SNVVQSPSTN EFFRDGDCWE ELGRMMEFMA DQSLPMSVDT VRGMYHA
101: GIDKPIDSSG DCVGLKKSLV YYRGSAGKGT KTDWMMHEFR LPSGDSSIAD DTRSTQEAEI WTICRIFKRS ASYRKQSSKW KASSTHKRAP ADSSCVTSSF
201: DCDNGSDYRC CASSGYSCSQ EHNQVHGWQC NSISQPPSLY SNVVQSPSTN EFFRDGDCWE ELGRMMEFMA DQSLPMSVDT VRGMYHA
001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
Arabidopsis Description
JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.