Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24238 | Canola | nucleus | 82.51 | 81.43 |
| Bra039353.1-P | Field mustard | nucleus | 82.18 | 81.11 |
| CDX82569 | Canola | nucleus | 80.2 | 80.46 |
| CDY43391 | Canola | nucleus | 78.22 | 80.34 |
| CDY64562 | Canola | nucleus | 75.58 | 77.89 |
| CDY60122 | Canola | nucleus | 76.9 | 71.25 |
| Bra034719.1-P | Field mustard | nucleus | 76.9 | 71.25 |
| CDY23551 | Canola | nucleus | 77.23 | 62.4 |
| AT2G43000.1 | Thale cress | nucleus | 45.87 | 50.55 |
| Zm00001d007850_P001 | Maize | nucleus | 38.61 | 46.61 |
| GSMUA_Achr10P... | Banana | cytosol | 40.59 | 46.07 |
| GSMUA_Achr4P32010_001 | Banana | nucleus | 42.57 | 44.95 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 38.61 | 44.66 |
| KRH46012 | Soybean | nucleus | 44.55 | 44.41 |
| KRG98971 | Soybean | nucleus | 43.89 | 43.75 |
| GSMUA_Achr9P10040_001 | Banana | nucleus | 42.57 | 42.43 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 42.57 | 42.02 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 33.99 | 41.2 |
| HORVU5Hr1G099470.2 | Barley | cytosol | 44.55 | 40.06 |
| TraesCS5D01G421100.1 | Wheat | nucleus | 44.55 | 39.59 |
| TraesCS5B01G415700.1 | Wheat | nucleus | 45.54 | 39.43 |
| TraesCS4B01G384700.1 | Wheat | cytoskeleton, cytosol, nucleus | 44.22 | 39.41 |
| TraesCS5A01G411900.1 | Wheat | nucleus | 44.55 | 39.36 |
| Zm00001d013151_P001 | Maize | cytosol | 43.56 | 39.29 |
| TraesCS5B01G415600.1 | Wheat | nucleus | 45.21 | 39.03 |
| TraesCS5A01G411800.1 | Wheat | nucleus | 45.21 | 38.92 |
| Zm00001d031164_P001 | Maize | nucleus | 37.95 | 37.58 |
| HORVU5Hr1G099460.1 | Barley | nucleus | 42.9 | 37.57 |
| EER93360 | Sorghum | nucleus | 45.54 | 37.3 |
| EES17466 | Sorghum | nucleus | 37.29 | 37.17 |
| TraesCS5D01G420800.1 | Wheat | nucleus | 44.22 | 36.81 |
| Os03t0777000-01 | Rice | nucleus | 43.89 | 36.74 |
| Zm00001d034277_P001 | Maize | cytosol, mitochondrion, nucleus | 44.55 | 36.68 |
| EER95852 | Sorghum | nucleus | 41.25 | 36.44 |
| HORVU5Hr1G099390.2 | Barley | nucleus | 34.32 | 35.99 |
| TraesCS5A01G411700.1 | Wheat | nucleus | 44.55 | 35.81 |
| Zm00001d018773_P001 | Maize | nucleus | 42.24 | 35.75 |
| TraesCS5D01G421000.1 | Wheat | nucleus | 44.22 | 34.9 |
| TraesCS5B01G415400.1 | Wheat | nucleus | 43.23 | 34.75 |
| AT5G39820.1 | Thale cress | nucleus | 36.63 | 32.94 |
| AT1G77450.1 | Thale cress | cytosol, nucleus, plastid | 25.41 | 30.43 |
| AT1G69490.1 | Thale cress | nucleus | 26.73 | 30.22 |
| AT2G17040.1 | Thale cress | nucleus | 27.06 | 29.71 |
| AT1G01720.1 | Thale cress | nucleus | 27.72 | 29.07 |
| AT5G08790.1 | Thale cress | nucleus | 26.73 | 28.62 |
| AT1G61110.1 | Thale cress | nucleus | 30.03 | 28.17 |
| AT4G27410.3 | Thale cress | nucleus | 28.38 | 27.39 |
| AT3G15500.1 | Thale cress | nucleus | 28.38 | 27.13 |
| AT1G52890.1 | Thale cress | nucleus | 28.05 | 26.81 |
| AT1G52880.1 | Thale cress | nucleus | 27.72 | 26.25 |
| AT1G26870.1 | Thale cress | nucleus | 34.65 | 25.12 |
| AT5G63790.2 | Thale cress | cytosol | 26.07 | 24.53 |
| AT3G04070.1 | Thale cress | nucleus | 28.71 | 24.23 |
| AT3G15510.1 | Thale cress | nucleus | 27.72 | 23.08 |
| AT2G02450.2 | Thale cress | nucleus | 29.04 | 21.26 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | EntrezGene:820475 | ProteinID:AEE75259.1 | ArrayExpress:AT3G12910 | EnsemblPlantsGene:AT3G12910 |
| RefSeq:AT3G12910 | TAIR:AT3G12910 | RefSeq:AT3G12910-TAIR-G | EnsemblPlants:AT3G12910.1 | TAIR:AT3G12910.1 | ProteinID:BAB02498.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | RefSeq:NP_187897.2 | PFAM:PF02365 | PO:PO:0000293 |
| PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009047 | PFscan:PS51005 | PANTHER:PTHR44543 | PANTHER:PTHR44543:SF1 |
| UniProt:Q9LSI4 | SUPFAM:SSF101941 | UniParc:UPI00000A14F1 | SEG:seg | : | : |
Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LSI4]
Coordinates
chr3:+:4109375..4110849
Molecular Weight (calculated)
35200.2 Da
IEP (calculated)
8.853
GRAVY (calculated)
-0.886
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKMIEPRDN TRESEDEDAL KLPGFRFHPT DEELVGYYLS KKVLLKKTSK IDEIVSQIDI YKFDPWDLPR SRNTEKESYF FCKRGRKYRN SIRPNRVTGS
101: GFWKATGIDK PVYSDGSNKA VIGLKKTLVY YLGSAGKGNK TDWMMHEFRL PTANDTIPGG PTHSNPTPTS LLHAEVWTLC RIFKRTVSSR KYTPDWRELA
201: NGKRVKQQQS NYQEAYINFG DNESSSSTNV MNVREGKGNY ERSVFQLQQT PYQHQNQPIL MDTTHVDSFQ HFSNDNIHHE TYETWPDELR SVVEFAFPPS
301: FLS
101: GFWKATGIDK PVYSDGSNKA VIGLKKTLVY YLGSAGKGNK TDWMMHEFRL PTANDTIPGG PTHSNPTPTS LLHAEVWTLC RIFKRTVSSR KYTPDWRELA
201: NGKRVKQQQS NYQEAYINFG DNESSSSTNV MNVREGKGNY ERSVFQLQQT PYQHQNQPIL MDTTHVDSFQ HFSNDNIHHE TYETWPDELR SVVEFAFPPS
301: FLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.