Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G421100.1 | Wheat | nucleus | 88.07 | 90.91 |
| TraesCS5A01G411900.1 | Wheat | nucleus | 87.22 | 89.5 |
| TraesCS5A01G411700.1 | Wheat | nucleus | 86.65 | 80.9 |
| HORVU5Hr1G099390.2 | Barley | nucleus | 53.12 | 64.71 |
| Os03t0777000-01 | Rice | nucleus | 65.62 | 63.81 |
| Zm00001d007850_P001 | Maize | nucleus | 42.33 | 59.36 |
| EER95852 | Sorghum | nucleus | 54.55 | 55.98 |
| Zm00001d018773_P001 | Maize | nucleus | 53.12 | 52.23 |
| VIT_19s0027g00880.t01 | Wine grape | nucleus | 31.53 | 51.87 |
| VIT_19s0027g00870.t01 | Wine grape | nucleus | 40.06 | 50.9 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 37.78 | 50.76 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 43.47 | 49.84 |
| VIT_12s0028g00860.t01 | Wine grape | nucleus | 42.05 | 49.66 |
| VIT_19s0027g00860.t01 | Wine grape | nucleus | 38.64 | 49.28 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 34.66 | 48.8 |
| VIT_19s0027g00840.t01 | Wine grape | nucleus | 38.35 | 47.54 |
| PGSC0003DMT400090327 | Potato | cytosol | 37.5 | 46.48 |
| KRH73618 | Soybean | cytosol | 42.05 | 46.25 |
| Bra000282.1-P | Field mustard | nucleus | 34.94 | 45.22 |
| AT3G12910.1 | Thale cress | nucleus | 38.92 | 45.21 |
| Solyc05g021090.2.1 | Tomato | nucleus | 35.8 | 45.16 |
| Bra037743.1-P | Field mustard | nucleus | 35.51 | 45.13 |
| CDY30373 | Canola | nucleus | 35.51 | 45.13 |
| KRH14512 | Soybean | nucleus | 41.76 | 45.09 |
| AT2G43000.1 | Thale cress | nucleus | 35.23 | 45.09 |
| CDX82569 | Canola | nucleus | 38.64 | 45.03 |
| VIT_19s0027g00910.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 37.5 | 44.75 |
| CDY64562 | Canola | nucleus | 37.22 | 44.56 |
| CDY53654 | Canola | nucleus | 35.23 | 44.44 |
| KRH46012 | Soybean | nucleus | 38.35 | 44.41 |
| PGSC0003DMT400003082 | Potato | nucleus | 35.51 | 44.33 |
| CDY55499 | Canola | nucleus | 34.94 | 44.09 |
| KRG98971 | Soybean | nucleus | 38.07 | 44.08 |
| CDY43391 | Canola | nucleus | 36.93 | 44.07 |
| CDY14865 | Canola | nucleus | 34.66 | 44.04 |
| CDY24238 | Canola | nucleus | 38.35 | 43.97 |
| Bra004736.1-P | Field mustard | nucleus | 34.94 | 43.93 |
| Bra039353.1-P | Field mustard | nucleus | 38.07 | 43.65 |
| Solyc02g069960.2.1 | Tomato | nucleus | 38.35 | 43.55 |
| PGSC0003DMT400054407 | Potato | nucleus | 38.64 | 43.31 |
| KRH13702 | Soybean | nucleus | 38.92 | 43.08 |
| Solyc07g045030.2.1 | Tomato | nucleus | 39.77 | 42.3 |
| CDY60122 | Canola | nucleus | 39.2 | 42.2 |
| Bra034719.1-P | Field mustard | nucleus | 38.92 | 41.9 |
| PGSC0003DMT400049124 | Potato | nucleus | 28.98 | 40.8 |
| CDY23551 | Canola | nucleus | 38.64 | 36.27 |
| TraesCS5A01G339600.1 | Wheat | nucleus | 33.52 | 30.97 |
| TraesCS6A01G307200.1 | Wheat | nucleus | 33.81 | 30.59 |
| TraesCS2A01G063300.1 | Wheat | nucleus | 32.67 | 30.18 |
| TraesCS2A01G063200.1 | Wheat | nucleus | 32.67 | 29.72 |
| TraesCS7A01G549000.1 | Wheat | cytosol, nucleus, plastid | 25.0 | 29.63 |
| TraesCS5A01G228000.1 | Wheat | nucleus | 32.95 | 29.44 |
| TraesCS2A01G063400.1 | Wheat | nucleus | 23.3 | 29.18 |
| TraesCS3A01G406000.1 | Wheat | nucleus | 24.15 | 28.43 |
| TraesCS6A01G057400.1 | Wheat | nucleus | 23.3 | 28.28 |
| TraesCS1A01G263700.1 | Wheat | nucleus | 23.01 | 27.65 |
| TraesCS4A01G131000.1 | Wheat | nucleus | 26.99 | 26.84 |
| TraesCS3A01G339600.1 | Wheat | nucleus | 23.58 | 26.43 |
| TraesCS5A01G500500.1 | Wheat | nucleus | 24.72 | 25.74 |
| TraesCS3A01G162900.1 | Wheat | cytosol | 22.16 | 25.32 |
| TraesCS2A01G101900.1 | Wheat | nucleus | 25.0 | 25.29 |
| TraesCS5A01G500400.1 | Wheat | nucleus | 25.0 | 25.29 |
| TraesCS2A01G102000.1 | Wheat | nucleus | 25.57 | 25.21 |
| TraesCS5A01G468300.1 | Wheat | nucleus | 23.3 | 25.08 |
| TraesCS5A01G500700.1 | Wheat | nucleus | 25.0 | 24.72 |
| CDY42810 | Canola | nucleus | 35.23 | 24.31 |
| TraesCS5A01G143200.1 | Wheat | nucleus | 24.72 | 24.23 |
| TraesCS4A01G219700.1 | Wheat | nucleus | 23.01 | 24.18 |
| CDX83510 | Canola | nucleus | 34.94 | 24.12 |
| TraesCS5A01G500600.1 | Wheat | nucleus | 25.0 | 23.85 |
| TraesCS3A01G078400.1 | Wheat | nucleus | 23.86 | 23.8 |
| TraesCS1A01G261800.1 | Wheat | nucleus | 26.42 | 23.72 |
| TraesCS7A01G318500.1 | Wheat | nucleus | 25.28 | 22.94 |
| TraesCS3A01G403300.1 | Wheat | nucleus | 26.42 | 22.57 |
| TraesCS2A01G201800.2 | Wheat | nucleus | 24.72 | 21.38 |
| TraesCS6A01G108300.2 | Wheat | nucleus | 25.0 | 21.15 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR44543 | PANTHER:PTHR44543:SF3 | SUPFAM:SSF101941 | EnsemblPlantsGene:TraesCS5A01G411800 | EnsemblPlants:TraesCS5A01G411800.1 | SEG:seg |
Description
No Description!
Coordinates
chr5A:+:600361475..600362759
Molecular Weight (calculated)
39305.0 Da
IEP (calculated)
6.520
GRAVY (calculated)
-0.594
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAKAKMSAM ELEMAKVMSD GEVVLGGAGD EEEDDVVLPG YRFHPTDEEL VTFYLRRKVA RKSLRIEVIR EMDIYKHDPW DLPKASTVGG EKEWYFFCLR
101: GRKYRNSIRP NRVTGSGFWK ATGIDRPIYS AASGGASGSS VSIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPPVAAAAAT NSSPSMQEAE VWTICRIFRR
201: TITYRKQQQP WRPAPAPSAA DSSSNTGSFQ SSEASDEYMN CLQAPAPAAP YIPQQQQQHQ YVSQTSTVDS GNFLYEENMH NQQFQGEWNA APAAPVPEQK
301: QQNPLSTAVA LHQNDHSHAV AANDFYKVEG YLEEIARMLE VTDSAGLYDY RS
101: GRKYRNSIRP NRVTGSGFWK ATGIDRPIYS AASGGASGSS VSIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPPVAAAAAT NSSPSMQEAE VWTICRIFRR
201: TITYRKQQQP WRPAPAPSAA DSSSNTGSFQ SSEASDEYMN CLQAPAPAAP YIPQQQQQHQ YVSQTSTVDS GNFLYEENMH NQQFQGEWNA APAAPVPEQK
301: QQNPLSTAVA LHQNDHSHAV AANDFYKVEG YLEEIARMLE VTDSAGLYDY RS
001: MSGEGNLGKD HEEENEAPLP GFRFHPTDEE LLGYYLRRKV ENKTIKLELI KQIDIYKYDP WDLPRVSSVG EKEWYFFCMR GRKYRNSVRP NRVTGSGFWK
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
101: ATGIDKPVYS NLDCVGLKKS LVYYLGSAGK GTKTDWMMHE FRLPSTTKTD SPAQQAEVWT LCRIFKRVTS QRNPTILPPN RKPVITLTDT CSKTSSLDSD
201: HTSHRTVDSM SHEPPLPQPQ NPYWNQHIVG FNQPTYTGND NNLLMSFWNG NGGDFIGDSA SWDELRSVID GNTKP
Arabidopsis Description
JUB1Transcription factor JUNGBRUNNEN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.