Factsheet for TraesCS5A01G468300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 22330896
nucleus: 24427285

gfp PMID: 22330896 doi

X Mao, H Zhang, X Qian, A Li, G Zhao, R Jing

The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China.

gfp PMID: 24427285 doi

X Mao, S Chen, A Li, C Zhai, R Jing

The Key Laboratory for Crop Gene Resources and Germplasm Enhancement, Ministry of Agriculture, The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G481200.1	Wheat	nucleus	97.55	98.15
TraesCS5B01G480900.2	Wheat	nucleus	97.86	97.86
HORVU5Hr1G111590.2	Barley	nucleus	96.94	96.06
EER93215	Sorghum	nucleus	75.54	77.43
Zm00001d034601_P001	Maize	nucleus	73.7	77.24
Os03t0815100-01	Rice	nucleus	73.7	76.27
Zm00001d013003_P001	Maize	nucleus, plastid	70.34	62.67
TraesCS6A01G057400.1	Wheat	nucleus	53.52	60.34
GSMUA_Achr4P02390_001	Banana	nucleus	48.62	60.23
GSMUA_Achr5P07590_001	Banana	nucleus	51.68	58.28
GSMUA_Achr7P21780_001	Banana	nucleus	52.6	57.72
GSMUA_Achr4P10310_001	Banana	nucleus	50.46	56.31
TraesCS3A01G339600.1	Wheat	nucleus	53.82	56.05
VIT_06s0004g00020.t01	Wine grape	nucleus	50.46	55.56
GSMUA_Achr10P...	Banana	cytosol	48.01	51.64
GSMUA_Achr6P32330_001	Banana	cytosol	41.28	50.0
TraesCS1A01G263700.1	Wheat	nucleus	39.76	44.37
TraesCS3A01G406000.1	Wheat	nucleus	39.14	42.81
TraesCS4A01G219700.1	Wheat	nucleus	37.92	37.01
TraesCS3A01G162900.1	Wheat	cytosol	33.95	36.04
TraesCS4A01G131000.1	Wheat	nucleus	37.61	34.75
TraesCS2A01G101900.1	Wheat	nucleus	36.39	34.2
TraesCS2A01G102000.1	Wheat	nucleus	36.39	33.33
TraesCS3A01G078400.1	Wheat	nucleus	34.86	32.29
TraesCS5A01G143200.1	Wheat	nucleus	34.86	31.75
TraesCS2A01G201800.2	Wheat	nucleus	37.0	29.73
TraesCS6A01G108300.2	Wheat	nucleus	37.31	29.33
TraesCS7A01G549000.1	Wheat	cytosol, nucleus, plastid	24.77	27.27
TraesCS5A01G500500.1	Wheat	nucleus	25.38	24.56
TraesCS5A01G411900.1	Wheat	nucleus	25.69	24.49
TraesCS5A01G500400.1	Wheat	nucleus	25.69	24.14
TraesCS6A01G307200.1	Wheat	nucleus	28.13	23.65
TraesCS1A01G261800.1	Wheat	nucleus	28.13	23.47
TraesCS5A01G500700.1	Wheat	nucleus	25.38	23.31
TraesCS5A01G411800.1	Wheat	nucleus	25.08	23.3
TraesCS7A01G318500.1	Wheat	nucleus	27.22	22.94
TraesCS5A01G411700.1	Wheat	nucleus	25.99	22.55
TraesCS5A01G500600.1	Wheat	nucleus	25.38	22.49
TraesCS2A01G063300.1	Wheat	nucleus	25.69	22.05
TraesCS5A01G339600.1	Wheat	nucleus	25.08	21.52
TraesCS3A01G403300.1	Wheat	nucleus	26.91	21.36
TraesCS2A01G063200.1	Wheat	nucleus	25.08	21.19
TraesCS5A01G228000.1	Wheat	nucleus	25.38	21.07
TraesCS2A01G063400.1	Wheat	nucleus	17.13	19.93

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31719	PANTHER:PTHR31719:SF80	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS5A01G468300	EnsemblPlants:TraesCS5A01G468300.1	SEG:seg

Description

No Description!

Coordinates

chr5A:+:645726165..645727685

Molecular Weight (calculated)

36524.0 Da

IEP (calculated)

6.729

GRAVY (calculated)

-0.672

Length

327 amino acids

Sequence
(BLAST)

001: MPAVRRRERD AEAELNLPPG FRFHPTDDEL VEHYLCRKAA GQRLPVPIIA EVDLYRFDPW ALPDRALFGT REWYFFTPRD RKYPNGSRPN RAAGNGYWKA
101: TGADKPVAPR GGRTMGIKKA LVFYAGKAPK GVKTDWIMHE YRLADAGRAA ASKKGSLRLD DWVLCRLYNK KNEWEKMQLQ QQGEEETMME PKAENTASDM
201: VVTSHSHSQS QSHSHSWGEA RTPESEIVDN DPSLFQQATA AAFQAQSPAA AAAHQEMMAT LMVPKKEAAD EAGRNDLFVD LSYDDIQSMY NGLDMMPPGD
301: DLLYSSLFAS PRVRGSQPGA GGMPAPF

Best Arabidopsis Sequence Match ( AT1G01720.1 )
(BLAST)

001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY

Arabidopsis Description

NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.