Factsheet for VIT_06s0004g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G094170.1	Barley	nucleus	28.28	66.14
GSMUA_Achr4P02390_001	Banana	nucleus	55.89	62.88
GSMUA_Achr7P21780_001	Banana	nucleus	58.59	58.39
GSMUA_Achr5P07590_001	Banana	nucleus	56.9	58.28
GSMUA_Achr4P10310_001	Banana	nucleus	54.88	55.63
TraesCS6B01G075200.1	Wheat	nucleus	53.2	55.44
Zm00001d012527_P001	Maize	cytosol, mitochondrion, nucleus	56.57	54.55
Os07t0225300-01	Rice	nucleus	50.17	53.99
EES03797	Sorghum	nucleus	56.9	53.48
Os01t0816100-01	Rice	nucleus	56.9	53.14
EER96087	Sorghum	nucleus	51.85	53.1
TraesCS6A01G057400.1	Wheat	nucleus	51.85	53.1
GSMUA_Achr10P...	Banana	cytosol	53.54	52.3
Os03t0815100-01	Rice	nucleus	55.56	52.22
HORVU4Hr1G089660.1	Barley	cytosol, nucleus	39.73	51.98
Zm00001d034601_P001	Maize	nucleus	54.55	51.92
Zm00001d019207_P001	Maize	nucleus	51.85	51.33
TraesCS3B01G371200.1	Wheat	nucleus	53.87	51.28
TraesCS5D01G481200.1	Wheat	nucleus	55.89	51.08
EER93215	Sorghum	nucleus	54.55	50.78
TraesCS5A01G468300.1	Wheat	nucleus	55.56	50.46
TraesCS5B01G480900.2	Wheat	nucleus	55.56	50.46
TraesCS3A01G339600.1	Wheat	nucleus	53.2	50.32
Zm00001d005208_P001	Maize	nucleus	51.18	50.16
HORVU5Hr1G111590.2	Barley	nucleus	55.56	50.0
TraesCS3D01G333100.1	Wheat	nucleus	53.2	50.0
HORVU2Hr1G004130.1	Barley	cytosol, nucleus	46.46	49.29
GSMUA_Achr6P32330_001	Banana	cytosol	44.78	49.26
VIT_18s0001g02300.t01	Wine grape	nucleus	45.79	45.48
TraesCS6D01G059300.1	Wheat	nucleus, plastid	52.19	43.91
Zm00001d013003_P001	Maize	nucleus, plastid	53.54	43.32
VIT_07s0031g02610.t01	Wine grape	nucleus	42.76	43.2
VIT_06s0004g02340.t01	Wine grape	nucleus	25.25	41.67
VIT_01s0026g02710.t01	Wine grape	nucleus	37.37	39.36
VIT_00s0375g00040.t01	Wine grape	nucleus	42.42	38.07
VIT_19s0014g03290.t01	Wine grape	nucleus	42.42	37.84
VIT_19s0014g03300.t01	Wine grape	nucleus	44.44	37.39
VIT_19s0027g00880.t01	Wine grape	nucleus	26.6	36.92
VIT_08s0007g07670.t01	Wine grape	nucleus	37.71	33.43
VIT_19s0027g00860.t01	Wine grape	nucleus	29.29	31.52
VIT_08s0040g02110.t01	Wine grape	nucleus	36.03	31.29
VIT_19s0027g00870.t01	Wine grape	nucleus	28.96	31.05
VIT_03s0038g03410.t01	Wine grape	nucleus	27.61	29.39
VIT_06s0004g03080.t01	Wine grape	nucleus	35.02	28.89
VIT_19s0027g00840.t01	Wine grape	nucleus	27.61	28.87
VIT_12s0028g00860.t01	Wine grape	nucleus	28.96	28.86
VIT_19s0027g00910.t01	Wine grape	cytoskeleton, cytosol, nucleus	27.95	28.14
VIT_04s0008g00150.t01	Wine grape	nucleus	26.26	27.96
VIT_14s0108g00860.t01	Wine grape	nucleus	31.65	26.63
VIT_01s0026g02360.t01	Wine grape	nucleus	33.0	24.44
VIT_12s0035g02020.t01	Wine grape	nucleus	29.97	19.52

Protein Annotations

EntrezGene:100263939	wikigene:100263939	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CBI16577	ProteinID:CBI16577.3
UniProt:D7SLP9	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	EntrezGene:LOC100263939	wikigene:LOC100263939	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR31719	PANTHER:PTHR31719:SF80	SUPFAM:SSF101941	UniParc:UPI00015C746E	ArrayExpress:VIT_06s0004g00020
EnsemblPlantsGene:VIT_06s0004g00020	EnsemblPlants:VIT_06s0004g00020.t01	RefSeq:XP_002283807	RefSeq:XP_002283807.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:95994..97288

Molecular Weight (calculated)

34435.3 Da

IEP (calculated)

5.841

GRAVY (calculated)

-0.821

Length

297 amino acids

Sequence
(BLAST)

001: MKRERDAEAE LNLPPGFRFH PTDEELVVHY LCRKASYQTL PVPIIVEIDL YKYDPWQLPE KALFGIKEWY FFTPRDRKYP NGSRPNRAAG NGYWKATGAD
101: KPVRPTGSTK AVGIKKALVF YSGKAPKGTK TDWIMHEYRL AQPNRSSDKK SSLRLDDWVL CRIYNKKNNW REKMQHQMNQ LLPHEPIDPF EVAEDDGSDS
201: LRTPESDIDI ETLSYNHDLH GAQGQGYSYQ VLHDNNLQIT DTDSGFPARE CFKEEDDYWL TNLNLEDLQN SLTTFGTMPL PDFSYQDSFS MIHGLPY

Best Arabidopsis Sequence Match ( AT1G01720.1 )
(BLAST)

001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY

Arabidopsis Description

NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.