Factsheet for VIT_19s0027g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g00840.t01	Wine grape	nucleus	71.96	54.23
VIT_19s0027g00870.t01	Wine grape	nucleus	69.63	53.79
VIT_19s0027g00860.t01	Wine grape	nucleus	68.69	53.26
VIT_19s0027g00910.t01	Wine grape	cytoskeleton, cytosol, nucleus	66.82	48.47
GSMUA_Achr7P00860_001	Banana	nucleus	54.67	44.66
GSMUA_Achr10P...	Banana	cytosol	51.87	41.57
VIT_12s0028g00860.t01	Wine grape	nucleus	57.48	41.28
GSMUA_Achr4P23030_001	Banana	nucleus	47.66	40.8
Zm00001d007850_P001	Maize	nucleus	47.66	40.64
GSMUA_Achr4P32010_001	Banana	nucleus	53.74	40.07
GSMUA_Achr9P10040_001	Banana	nucleus	55.14	38.82
GSMUA_Achr5P02170_001	Banana	nucleus	55.61	38.76
PGSC0003DMT400003082	Potato	nucleus	48.13	36.52
Solyc05g021090.2.1	Tomato	nucleus	47.2	36.2
VIT_06s0004g02340.t01	Wine grape	nucleus	30.37	36.11
HORVU5Hr1G099390.2	Barley	nucleus	47.2	34.95
EES17466	Sorghum	nucleus	48.13	33.88
HORVU5Hr1G099470.2	Barley	cytosol	52.34	33.23
Zm00001d031164_P001	Maize	nucleus	47.2	33.01
TraesCS5A01G411900.1	Wheat	nucleus	52.34	32.65
TraesCS5D01G421100.1	Wheat	nucleus	51.4	32.26
Zm00001d013151_P001	Maize	cytosol	50.47	32.14
TraesCS4B01G384700.1	Wheat	cytoskeleton, cytosol, nucleus	50.47	31.76
TraesCS5B01G415700.1	Wheat	nucleus	51.87	31.71
TraesCS5A01G411800.1	Wheat	nucleus	51.87	31.53
EER95852	Sorghum	nucleus	50.47	31.49
Os03t0777000-01	Rice	nucleus	52.8	31.22
TraesCS5B01G415600.1	Wheat	nucleus	50.93	31.05
TraesCS5D01G420800.1	Wheat	nucleus	52.8	31.04
HORVU5Hr1G099460.1	Barley	nucleus	49.53	30.64
EER93360	Sorghum	nucleus	52.8	30.54
Zm00001d018773_P001	Maize	nucleus	50.47	30.17
TraesCS5B01G415400.1	Wheat	nucleus	52.34	29.71
TraesCS5A01G411700.1	Wheat	nucleus	52.34	29.71
Zm00001d034277_P001	Maize	cytosol, mitochondrion, nucleus	50.93	29.62
VIT_14s0108g00860.t01	Wine grape	nucleus	48.13	29.18
TraesCS5D01G421000.1	Wheat	nucleus	50.0	27.86
VIT_07s0031g02610.t01	Wine grape	nucleus	37.85	27.55
VIT_06s0004g00020.t01	Wine grape	nucleus	36.92	26.6
VIT_01s0026g02710.t01	Wine grape	nucleus	34.58	26.24
VIT_18s0001g02300.t01	Wine grape	nucleus	35.98	25.75
VIT_19s0014g03290.t01	Wine grape	nucleus	39.72	25.53
VIT_01s0026g02360.t01	Wine grape	nucleus	47.66	25.44
VIT_04s0008g00150.t01	Wine grape	nucleus	31.78	24.37
VIT_03s0038g03410.t01	Wine grape	nucleus	31.78	24.37
VIT_00s0375g00040.t01	Wine grape	nucleus	36.92	23.87
VIT_08s0007g07670.t01	Wine grape	nucleus	34.58	22.09
VIT_08s0040g02110.t01	Wine grape	nucleus	34.58	21.64
VIT_19s0014g03300.t01	Wine grape	nucleus	35.51	21.53
VIT_06s0004g03080.t01	Wine grape	nucleus	34.58	20.56
VIT_12s0035g02020.t01	Wine grape	nucleus	36.92	17.32

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CBI21754	ProteinID:CBI21754.3	UniProt:D7SWV4	EMBL:FN595234
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003441
InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR44543
PANTHER:PTHR44543:SF2	SUPFAM:SSF101941	TMHMM:TMhelix	UniParc:UPI0001BE2232	ArrayExpress:VIT_19s0027g00880	EnsemblPlantsGene:VIT_19s0027g00880
EnsemblPlants:VIT_19s0027g00880.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:20238195..20240748

Molecular Weight (calculated)

25649.8 Da

IEP (calculated)

10.327

GRAVY (calculated)

-0.588

Length

214 amino acids

Sequence
(BLAST)

001: MSSTDTVKDD DLPGFRFHPT DEELVSFYLR RKIEKQLISL EFIKQIDIYK YDPWDLAKNN NTVTDKEWYF FCKRGRKYRN SVRPNRVTGS GFWKATGIDK
101: PIYSAEGQGH GCIGLKKSLV YYRGSAGKGT KTEWMMHEFR LPADQKNAQA ADEEVIIRWY TIFIFVELHK IDRRGKRRKK VKKEKKKNHI HISIFFVFFS
201: WEFFFFFRFF FLSA

Best Arabidopsis Sequence Match ( AT1G26870.1 )
(BLAST)

001: MGDRNNDGDQ KMEDVLLPGF RFHPTDEELV SFYLKRKVQH NPLSIELIRQ LDIYKYDPWD LPKFAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT
101: GTDRPIYSSE GNKCIGLKKS LVFYKGRAAK GVKTDWMMHE FRLPSLSEPS PPSKRFFDSP VSPNDSWAIC RIFKKTNTTT LRALSHSFVS SLPPETSTDT
201: MSNQKQSNTY HFSSDKILKP SSHFQFHHEN MNTPKTSNST TPSVPTISPF SYLDFTSYDK PTNVFNPVSC LDQQYLTNLF LATQETQPQF PRLPSSNEIP
301: SFLLNTSSDS TFLGEFTSHI DLSAVLAQEQ CPPLVSLPQE YQETGFEGNG IMKNMRGSNE DHLGDHCDTL RFDDFTSTIN ENHRHHQDLK QNMTLLESYY
401: SSLSSINSDL PACFSSTT

Arabidopsis Description

FEZProtein FEZ [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.