Factsheet for VIT_06s0004g02340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g00880.t01	Wine grape	nucleus	36.11	30.37
VIT_07s0031g02610.t01	Wine grape	nucleus	42.78	26.19
VIT_06s0004g00020.t01	Wine grape	nucleus	41.67	25.25
VIT_18s0001g02300.t01	Wine grape	nucleus	40.56	24.41
VIT_01s0026g02710.t01	Wine grape	nucleus	37.78	24.11
VIT_19s0027g00860.t01	Wine grape	nucleus	36.67	23.91
VIT_19s0027g00870.t01	Wine grape	nucleus	36.11	23.47
VIT_00s0375g00040.t01	Wine grape	nucleus	41.11	22.36
VIT_19s0014g03290.t01	Wine grape	nucleus	41.11	22.22
VIT_19s0027g00840.t01	Wine grape	nucleus	35.0	22.18
VIT_12s0028g00860.t01	Wine grape	nucleus	36.11	21.81
VIT_08s0007g07670.t01	Wine grape	nucleus	40.56	21.79
VIT_08s0040g02110.t01	Wine grape	nucleus	41.11	21.64
VIT_19s0014g03300.t01	Wine grape	nucleus	41.67	21.25
VIT_03s0038g03410.t01	Wine grape	nucleus	32.78	21.15
VIT_04s0008g00150.t01	Wine grape	nucleus	32.22	20.79
VIT_19s0027g00910.t01	Wine grape	cytoskeleton, cytosol, nucleus	33.89	20.68
VIT_06s0004g03080.t01	Wine grape	nucleus	40.0	20.0
VIT_14s0108g00860.t01	Wine grape	nucleus	37.78	19.26
Os05t0415400-01	Rice	extracellular, nucleus, plastid	30.56	17.74
VIT_01s0026g02360.t01	Wine grape	nucleus	34.44	15.46
VIT_12s0035g02020.t01	Wine grape	nucleus	35.56	14.04
Solyc07g006840.1.1	Tomato	nucleus	36.67	13.66
PGSC0003DMT400048237	Potato	nucleus	35.56	13.09
Os02t0745300-00	Rice	plastid	0.0	0.0

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:AM423881	ProteinID:CAN73322	ProteinID:CAN73322.1	ProteinID:CCB43701
ProteinID:CCB43701.1	UniProt:F6GU37	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR44426	PANTHER:PTHR44426:SF3	SUPFAM:SSF101941	UniParc:UPI00021080B6	ArrayExpress:VIT_06s0004g02340	EnsemblPlantsGene:VIT_06s0004g02340
EnsemblPlants:VIT_06s0004g02340.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:2766401..2773290

Molecular Weight (calculated)

20630.1 Da

IEP (calculated)

7.640

GRAVY (calculated)

-0.900

Length

180 amino acids

Sequence
(BLAST)

001: MNLSELSEDA SLQTVEGKAE EVQNSSSKGG ELFDLNSLPP GYRFNPTDAE IIVFYLRKKI DHQSLPPNKI IEVNLYGYDP DELAARYEPS GNDEWFYFTP
101: RERKYRNGQR PNRSIGEGYW KATGADKEIK FEDRTVGYRK ALVFYRGSAQ NGVKTNWIMH EFTVAKPPGP PRRSGVNDMR

Best Arabidopsis Sequence Match ( AT3G04070.2 )
(BLAST)

001: MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSPVPLS IIADVDIYKS DPWDLPAKAP FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI
101: AVPNGEGFHE NIGIKKALVF YRGKPPKGVK TNWIMHEYRL ADSLSPKRIN SSRSGGSELD DWVLCRIYKK SHASLSSPDV ALVTSNQEHE ENDNEPFVDR
201: GTFLPNLQND QPLKRQKSSC SFSNLLDATD LTFLANFLNE TPENRSESDF SFMIGNFSNP DIYGNHYLDQ KLPQLSSPTS ETSGIGSKRE RVDFAEETIN
301: ASKKMMNTYS YNNSIDQMDH SMMQQPSFLN QELMMSSHLQ YQG

Arabidopsis Description

NAC047NAC transcription factor 47 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.