Factsheet for VIT_18s0001g02300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16387	Soybean	nucleus	71.24	76.07
KRH17977	Soybean	nucleus	67.89	75.75
KRH64668	Soybean	nucleus	74.92	74.67
Solyc06g060230.2.1	Tomato	nucleus	72.58	73.31
KRH53247	Soybean	nucleus	72.91	72.91
PGSC0003DMT400023917	Potato	nucleus	70.9	72.85
PGSC0003DMT400045294	Potato	nucleus	71.91	72.64
Solyc11g017470.1.1	Tomato	nucleus	68.23	70.1
VIT_07s0031g02610.t01	Wine grape	nucleus	66.89	68.03
AT1G77450.1	Thale cress	cytosol, nucleus, plastid	57.53	67.98
GSMUA_Achr10P...	Banana	nucleus	57.86	67.84
KXG33829	Sorghum	nucleus	64.88	66.67
Bra008309.1-P	Field mustard	cytosol, nucleus, plastid	57.86	66.54
CDY40894	Canola	nucleus	57.86	66.54
CDY38346	Canola	cytosol, nucleus, plastid	57.86	66.54
GSMUA_Achr6P18720_001	Banana	nucleus	60.87	66.42
Zm00001d042609_P001	Maize	cytosol, mitochondrion, nucleus	64.21	65.08
GSMUA_Achr7P23250_001	Banana	nucleus	57.86	64.55
Os01t0884300-01	Rice	nucleus	64.55	63.7
HORVU1Hr1G063740.1	Barley	nucleus	61.54	62.8
TraesCS1A01G263700.1	Wheat	nucleus	61.54	62.8
TraesCS3D01G401200.1	Wheat	nucleus	62.21	62.21
TraesCS3A01G406000.1	Wheat	nucleus	62.21	62.21
TraesCS3B01G439600.1	Wheat	nucleus	61.87	62.08
GSMUA_Achr6P25380_001	Banana	nucleus	56.86	62.04
TraesCS1D01G263800.1	Wheat	nucleus	61.87	61.67
CDX84050	Canola	nucleus	39.8	61.66
TraesCS1B01G274300.1	Wheat	nucleus	61.2	60.8
GSMUA_Achr6P17720_001	Banana	nucleus	58.19	60.0
GSMUA_Achr3P18990_001	Banana	plastid	59.87	53.75
Zm00001d038221_P001	Maize	plastid	60.2	53.1
KXG22031	Sorghum	nucleus	59.53	52.2
Os11t0184900-02	Rice	nucleus	57.19	51.98
TraesCS4A01G219700.1	Wheat	nucleus	56.52	50.45
TraesCS4D01G094400.1	Wheat	nucleus	56.52	50.45
HORVU4Hr1G017430.7	Barley	nucleus	55.85	50.3
TraesCS4B01G098200.1	Wheat	nucleus	56.19	50.3
Zm00001d000112_P001	Maize	nucleus	57.53	47.91
VIT_06s0004g00020.t01	Wine grape	nucleus	45.48	45.79
OQU83033	Sorghum	nucleus	56.86	44.27
VIT_01s0026g02710.t01	Wine grape	nucleus	39.8	42.2
VIT_06s0004g02340.t01	Wine grape	nucleus	24.41	40.56
VIT_19s0014g03290.t01	Wine grape	nucleus	43.81	39.34
VIT_00s0375g00040.t01	Wine grape	nucleus	41.47	37.46
VIT_19s0014g03300.t01	Wine grape	nucleus	43.48	36.83
VIT_19s0027g00880.t01	Wine grape	nucleus	25.75	35.98
VIT_08s0007g07670.t01	Wine grape	nucleus	37.12	33.13
VIT_08s0040g02110.t01	Wine grape	nucleus	37.46	32.75
VIT_06s0004g03080.t01	Wine grape	nucleus	36.79	30.56
VIT_04s0008g00150.t01	Wine grape	nucleus	28.09	30.11
VIT_03s0038g03410.t01	Wine grape	nucleus	28.09	30.11
VIT_19s0027g00860.t01	Wine grape	nucleus	27.76	30.07
VIT_19s0027g00870.t01	Wine grape	nucleus	27.42	29.6
VIT_12s0028g00860.t01	Wine grape	nucleus	29.1	29.19
VIT_19s0027g00840.t01	Wine grape	nucleus	27.42	28.87
VIT_19s0027g00910.t01	Wine grape	cytoskeleton, cytosol, nucleus	27.42	27.8
VIT_14s0108g00860.t01	Wine grape	nucleus	30.77	26.06
VIT_01s0026g02360.t01	Wine grape	nucleus	32.11	23.94
VIT_12s0035g02020.t01	Wine grape	nucleus	33.11	21.71

Protein Annotations

EntrezGene:100255807	wikigene:100255807	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CCB45474	ProteinID:CCB45474.1
UniProt:F6H0K2	EMBL:FN595227	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0045893	GO:GO:1900057
InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100255807	wikigene:LOC100255807	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31719	PANTHER:PTHR31719:SF16	SUPFAM:SSF101941	TIGR:TC64843
UniParc:UPI0001985445	ArrayExpress:VIT_18s0001g02300	EnsemblPlantsGene:VIT_18s0001g02300	EnsemblPlants:VIT_18s0001g02300.t01	unigene:Vvi.10491	RefSeq:XP_002285870
RefSeq:XP_002285870.2	RefSeq:XP_010664191.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:2643266..2645234

Molecular Weight (calculated)

34093.3 Da

IEP (calculated)

7.149

GRAVY (calculated)

-0.665

Length

299 amino acids

Sequence
(BLAST)

001: MTAELQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKFDPW QLPEMALYGE KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGHP
101: KPVGIKKALV FYAGKAPRGE KTNWIMHEYR LADVDRSARK KNNSLRLDDW VLCRIYNKKG IVEKQHTAAR KSDCSDVEDQ KPGPLALSRK VGAMPPPPPP
201: SSSTAPTATA ALDDLVYFDS SDSVPRLHTD SSCSEHVVSP EFTCEREVQS EPKWKEWENP MDFSYNYMDA TVDNAFLSQF PNNQMSPLQD MFMYLQKPF

Best Arabidopsis Sequence Match ( AT1G01720.1 )
(BLAST)

001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY

Arabidopsis Description

NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.