Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22740_001 | |
| GSMUA_Achr4P17470_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08790.1 | GSMUA_Achr1P22740_001 | AT5G35750.1 | 18642946 |
| AT5G08790.1 | GSMUA_Achr4P17470_001 | AT5G35750.1 | 18642946 |
| AT5G08790.1 | GSMUA_AchrUn_... | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 67.88 | 72.94 |
| GSMUA_Achr7P23250_001 | Banana | nucleus | 69.34 | 70.9 |
| GSMUA_Achr6P25380_001 | Banana | nucleus | 62.77 | 62.77 |
| KRH17977 | Soybean | nucleus | 60.58 | 61.94 |
| VIT_18s0001g02300.t01 | Wine grape | nucleus | 66.42 | 60.87 |
| Bra033239.1-P | Field mustard | nucleus | 63.14 | 60.7 |
| CDX90054 | Canola | nucleus | 63.14 | 60.7 |
| CDY15158 | Canola | nucleus | 62.77 | 60.14 |
| KRH16387 | Soybean | nucleus | 61.31 | 60.0 |
| Solyc06g060230.2.1 | Tomato | nucleus | 64.6 | 59.8 |
| PGSC0003DMT400023917 | Potato | nucleus | 63.5 | 59.79 |
| AT1G01720.1 | Thale cress | nucleus | 62.77 | 59.52 |
| PGSC0003DMT400045294 | Potato | nucleus | 64.23 | 59.46 |
| AT1G77450.1 | Thale cress | cytosol, nucleus, plastid | 54.74 | 59.29 |
| Solyc11g017470.1.1 | Tomato | nucleus | 62.77 | 59.11 |
| GSMUA_Achr6P17720_001 | Banana | nucleus | 62.41 | 58.97 |
| CDY40894 | Canola | nucleus | 55.47 | 58.46 |
| KRH64668 | Soybean | nucleus | 63.87 | 58.33 |
| KRH53247 | Soybean | nucleus | 63.5 | 58.19 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 54.74 | 58.14 |
| Bra008309.1-P | Field mustard | cytosol, nucleus, plastid | 55.11 | 58.08 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 55.11 | 58.08 |
| KRH59618 | Soybean | nucleus | 62.04 | 57.05 |
| CDY41537 | Canola | nucleus | 51.82 | 56.8 |
| Bra038663.1-P | Field mustard | nucleus | 51.82 | 56.8 |
| CDX84443 | Canola | nucleus | 52.19 | 56.75 |
| VIT_07s0031g02610.t01 | Wine grape | nucleus | 60.58 | 56.46 |
| KRH63977 | Soybean | nucleus | 59.85 | 56.36 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 53.65 | 56.11 |
| KRH53959 | Soybean | nucleus | 60.22 | 55.93 |
| CDY31350 | Canola | nucleus | 54.01 | 55.85 |
| Bra029201.1-P | Field mustard | cytosol | 54.01 | 55.85 |
| Bra028645.1-P | Field mustard | nucleus | 56.57 | 55.76 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 53.28 | 55.73 |
| CDY21567 | Canola | nucleus | 55.11 | 54.32 |
| AT5G08790.1 | Thale cress | nucleus | 55.84 | 54.06 |
| GSMUA_Achr7P21770_001 | Banana | nucleus | 39.42 | 54.0 |
| Bra009370.1-P | Field mustard | nucleus | 54.74 | 53.96 |
| CDX69919 | Canola | nucleus | 54.74 | 53.96 |
| Bra006015.1-P | Field mustard | cytosol, nucleus, plastid | 55.11 | 53.93 |
| Solyc04g009440.2.1 | Tomato | nucleus | 59.12 | 53.82 |
| PGSC0003DMT400082472 | Potato | nucleus | 59.12 | 53.47 |
| CDX81120 | Canola | nucleus | 46.72 | 53.11 |
| CDX84050 | Canola | nucleus | 36.5 | 51.81 |
| Os11t0184900-02 | Rice | nucleus | 61.31 | 51.06 |
| TraesCS4D01G094400.1 | Wheat | nucleus | 62.41 | 51.04 |
| TraesCS4B01G098200.1 | Wheat | nucleus | 62.04 | 50.9 |
| TraesCS4A01G219700.1 | Wheat | nucleus | 62.04 | 50.75 |
| HORVU4Hr1G017430.7 | Barley | nucleus | 61.31 | 50.6 |
| CDY39846 | Canola | mitochondrion | 53.65 | 50.0 |
| GSMUA_Achr3P18990_001 | Banana | plastid | 60.22 | 49.55 |
| Zm00001d000112_P001 | Maize | nucleus | 62.77 | 47.91 |
| GSMUA_Achr4P02390_001 | Banana | nucleus | 44.89 | 46.59 |
| AT5G63790.2 | Thale cress | cytosol | 54.74 | 46.58 |
| GSMUA_Achr6P32330_001 | Banana | cytosol | 43.8 | 44.44 |
| GSMUA_Achr5P07590_001 | Banana | nucleus | 46.72 | 44.14 |
| OQU83033 | Sorghum | nucleus | 60.95 | 43.49 |
| GSMUA_Achr7P21780_001 | Banana | nucleus | 45.99 | 42.28 |
| GSMUA_Achr4P10310_001 | Banana | nucleus | 43.8 | 40.96 |
| GSMUA_Achr10P... | Banana | cytosol | 43.07 | 38.82 |
| GSMUA_Achr10P... | Banana | nucleus | 39.42 | 35.76 |
| GSMUA_Achr9P19520_001 | Banana | nucleus | 41.97 | 35.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.88 | 34.25 |
| GSMUA_Achr1P08860_001 | Banana | nucleus | 44.53 | 33.98 |
| GSMUA_Achr4P02380_001 | Banana | nucleus | 40.88 | 33.53 |
| GSMUA_Achr5P19060_001 | Banana | nucleus | 29.2 | 32.79 |
| GSMUA_Achr6P32320_001 | Banana | nucleus | 40.88 | 32.46 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.29 | 31.8 |
| GSMUA_Achr1P02710_001 | Banana | nucleus | 31.39 | 31.62 |
| GSMUA_Achr11P... | Banana | nucleus | 29.56 | 30.92 |
| GSMUA_Achr3P18010_001 | Banana | nucleus | 40.88 | 30.43 |
| GSMUA_Achr7P00860_001 | Banana | nucleus | 28.83 | 30.15 |
| GSMUA_Achr10P... | Banana | cytosol | 29.2 | 29.96 |
| GSMUA_Achr4P23030_001 | Banana | nucleus | 26.64 | 29.2 |
| GSMUA_Achr5P17060_001 | Banana | nucleus | 29.93 | 29.08 |
| GSMUA_Achr11P... | Banana | nucleus | 33.21 | 28.62 |
| GSMUA_Achr1P18110_001 | Banana | cytosol, nucleus, plastid | 22.63 | 28.57 |
| GSMUA_Achr9P04960_001 | Banana | nucleus | 40.88 | 28.21 |
| GSMUA_Achr7P04030_001 | Banana | nucleus | 29.2 | 28.07 |
| GSMUA_Achr4P32010_001 | Banana | nucleus | 29.2 | 27.87 |
| GSMUA_Achr3P14720_001 | Banana | nucleus | 29.2 | 27.68 |
| GSMUA_Achr3P00560_001 | Banana | nucleus | 28.1 | 27.6 |
| GSMUA_Achr10P... | Banana | nucleus | 32.48 | 27.22 |
| GSMUA_Achr9P10040_001 | Banana | nucleus | 29.56 | 26.64 |
| GSMUA_Achr5P02170_001 | Banana | nucleus | 29.2 | 26.06 |
| GSMUA_Achr3P21690_001 | Banana | nucleus | 32.85 | 25.28 |
| GSMUA_Achr11P... | Banana | nucleus | 30.66 | 25.07 |
| GSMUA_Achr7P23650_001 | Banana | nucleus | 31.75 | 25.0 |
| GSMUA_Achr10P... | Banana | nucleus | 30.66 | 24.78 |
| GSMUA_Achr6P02680_001 | Banana | nucleus | 32.12 | 22.86 |
| GSMUA_Achr10P... | Banana | cytosol | 32.48 | 21.09 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G18720_001 |
| EnsemblPlants:GSMUA_Achr6P18720_001 | EnsemblPlants:GSMUA_Achr6T18720_001 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M0T870 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31719 | PANTHER:PTHR31719:SF16 | SUPFAM:SSF101941 |
| UniParc:UPI000296BB9B | : | : | : | : | : |
Description
NAC domain-containing protein 48 [Source:GMGC_GENE;Acc:GSMUA_Achr6G18720_001]
Coordinates
chr6:-:12928407..12930069
Molecular Weight (calculated)
30884.7 Da
IEP (calculated)
9.058
GRAVY (calculated)
-0.647
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGGDLQLPP GFRFHPTDEE LVMHYLCRRC AGLPVAVPII AELDLYKFDP WHLPGMALYG EKEWYFFSPR ERKYPNGSRP NRAAGSGYWK ATGADKPVGS
101: PKPVAIKKAL VFYTGKAPKG DKTNWIMHEY RLADVDRSAR KKNSLRLDDW VLCRIYNKKG SSGSEKLGNT DGKPVVSRSV WPGPATSPEE RKPVLGPYAP
201: SPLAHVPAEM VYSFAPSDSM PKLHADSSCS ERPEFTCERE VQSQPRWRPT TEWDRALGLE DPFQDILTYL GKPF
101: PKPVAIKKAL VFYTGKAPKG DKTNWIMHEY RLADVDRSAR KKNSLRLDDW VLCRIYNKKG SSGSEKLGNT DGKPVVSRSV WPGPATSPEE RKPVLGPYAP
201: SPLAHVPAEM VYSFAPSDSM PKLHADSSCS ERPEFTCERE VQSQPRWRPT TEWDRALGLE DPFQDILTYL GKPF
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.