Factsheet for Solyc06g060230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045294	Potato	nucleus	97.3	97.3
VIT_18s0001g02300.t01	Wine grape	nucleus	73.31	72.58
Solyc11g017470.1.1	Tomato	nucleus	70.61	71.82
KRH64668	Soybean	nucleus	72.64	71.67
KRH17977	Soybean	nucleus	64.53	71.27
KRH16387	Soybean	nucleus	67.23	71.07
KRH53247	Soybean	nucleus	70.27	69.57
GSMUA_Achr10P...	Banana	nucleus	57.43	66.67
AT1G77450.1	Thale cress	cytosol, nucleus, plastid	56.76	66.4
Bra008309.1-P	Field mustard	cytosol, nucleus, plastid	56.76	64.62
CDY40894	Canola	nucleus	56.76	64.62
CDY38346	Canola	cytosol, nucleus, plastid	56.76	64.62
GSMUA_Achr6P18720_001	Banana	nucleus	59.8	64.6
KXG33829	Sorghum	nucleus	61.82	62.89
GSMUA_Achr6P25380_001	Banana	nucleus	57.09	61.68
GSMUA_Achr7P23250_001	Banana	nucleus	55.74	61.57
Zm00001d042609_P001	Maize	cytosol, mitochondrion, nucleus	61.15	61.36
Solyc04g009440.2.1	Tomato	nucleus	62.16	61.13
HORVU1Hr1G063740.1	Barley	nucleus	60.47	61.09
TraesCS1A01G263700.1	Wheat	nucleus	60.14	60.75
TraesCS3D01G401200.1	Wheat	nucleus	61.15	60.54
TraesCS3B01G439600.1	Wheat	nucleus	60.81	60.4
TraesCS3A01G406000.1	Wheat	nucleus	60.81	60.2
TraesCS1D01G263800.1	Wheat	nucleus	60.81	60.0
Os01t0884300-01	Rice	nucleus	61.15	59.74
TraesCS1B01G274300.1	Wheat	nucleus	60.14	59.14
CDX84050	Canola	nucleus	37.84	58.03
GSMUA_Achr6P17720_001	Banana	nucleus	55.74	56.9
GSMUA_Achr3P18990_001	Banana	plastid	57.77	51.35
Zm00001d038221_P001	Maize	plastid	58.78	51.33
KXG22031	Sorghum	nucleus	57.77	50.15
Os11t0184900-02	Rice	nucleus	55.41	49.85
TraesCS4B01G098200.1	Wheat	nucleus	54.73	48.5
HORVU4Hr1G017430.7	Barley	nucleus	54.39	48.49
TraesCS4A01G219700.1	Wheat	nucleus	54.73	48.36
TraesCS4D01G094400.1	Wheat	nucleus	54.39	48.06
Zm00001d000112_P001	Maize	nucleus	55.07	45.4
OQU83033	Sorghum	nucleus	55.07	42.45
Solyc04g005610.2.1	Tomato	nucleus	37.84	40.73
Solyc05g007770.2.1	Tomato	nucleus	37.84	39.72
Solyc07g063420.2.1	Tomato	nucleus	42.23	37.99
Solyc12g013620.1.1	Tomato	nucleus	42.23	35.82
Solyc10g006880.2.1	Tomato	nucleus	41.22	34.37
Solyc07g063410.2.1	Tomato	nucleus	40.88	33.99
Solyc10g083450.1.1	Tomato	cytosol	33.11	33.91
Solyc11g065540.1.1	Tomato	nucleus	34.12	32.69
Solyc02g061780.2.1	Tomato	nucleus	25.68	31.15
Solyc10g055760.1.1	Tomato	cytosol	27.7	28.98
Solyc02g069960.2.1	Tomato	nucleus	30.07	28.71
Solyc05g021090.2.1	Tomato	nucleus	26.69	28.32
Solyc07g045030.2.1	Tomato	nucleus	30.41	27.19
Solyc02g087920.2.1	Tomato	nucleus	31.42	24.28
Solyc01g102740.2.1	Tomato	nucleus	32.43	23.24
Solyc05g007550.1.1	Tomato	nucleus	30.41	23.08
Solyc07g006840.1.1	Tomato	nucleus	32.43	19.88

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:ADB27957.1	UniProt:B6D1Q3	EMBL:EU670749	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31719	PANTHER:PTHR31719:SF16	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc06g060230.2
EnsemblPlants:Solyc06g060230.2.1	UniParc:UPI000181BE0E	SEG:seg	:	:	:

Description

Nam-like protein 1 [Source:UniProtKB/TrEMBL;Acc:B6D1Q3]

Coordinates

chr6:-:38187574..38189009

Molecular Weight (calculated)

33926.2 Da

IEP (calculated)

7.248

GRAVY (calculated)

-0.712

Length

296 amino acids

Sequence
(BLAST)

001: MTAAELQLPP GFRFHPTDEE LVTHYLCRKC TSQPIAVPIV AEIDLYKFDP WDLPDLALYG EKEWYFFSPR DRKYPNGSRP NRAAGTGYWK ATGADKPIGN
101: PKAVGIKKAL VFYSGKAPKG EKTNWIMHEY RLADVDRSAR KNNNSLRLDD WVLCRIYNKK GSIEKNRKMN TTCYMDKVGS PEDRKPEILP PLPPHPQPQQ
201: LHNDFFYLPS DSVPKMHSDS SCSEHVLSPE FTCEREVQSE PKLTDWEKAT LDLPFNYMDA TTGATTVDNS LLGSQFQSSY QMSPLQDMFM HLHKPF

Best Arabidopsis Sequence Match ( AT1G01720.1 )
(BLAST)

001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY

Arabidopsis Description

NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.