Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d014297_P006 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08790.1 | Zm00001d014297_P006 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33829 | Sorghum | nucleus | 94.24 | 95.53 |
| Os01t0884300-01 | Rice | nucleus | 86.1 | 83.83 |
| TraesCS3B01G439600.1 | Wheat | nucleus | 82.03 | 81.21 |
| TraesCS3D01G401200.1 | Wheat | nucleus | 82.03 | 80.94 |
| TraesCS3A01G406000.1 | Wheat | nucleus | 81.69 | 80.6 |
| Zm00001d038221_P001 | Maize | plastid | 77.63 | 67.55 |
| KRH17977 | Soybean | nucleus | 58.64 | 64.55 |
| VIT_18s0001g02300.t01 | Wine grape | nucleus | 65.08 | 64.21 |
| KRH16387 | Soybean | nucleus | 59.66 | 62.86 |
| GSMUA_Achr6P25380_001 | Banana | nucleus | 58.31 | 62.77 |
| PGSC0003DMT400023917 | Potato | nucleus | 61.69 | 62.54 |
| AT1G01720.1 | Thale cress | nucleus | 61.02 | 62.28 |
| Bra033239.1-P | Field mustard | nucleus | 60.0 | 62.11 |
| CDX90054 | Canola | nucleus | 60.0 | 62.11 |
| CDY15158 | Canola | nucleus | 59.66 | 61.54 |
| Solyc11g017470.1.1 | Tomato | nucleus | 60.68 | 61.51 |
| Solyc06g060230.2.1 | Tomato | nucleus | 61.36 | 61.15 |
| AT1G77450.1 | Thale cress | cytosol, nucleus, plastid | 52.2 | 60.87 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 53.22 | 60.85 |
| KRH63977 | Soybean | nucleus | 59.66 | 60.48 |
| PGSC0003DMT400045294 | Potato | nucleus | 60.68 | 60.47 |
| CDY41537 | Canola | nucleus | 50.85 | 60.0 |
| Bra038663.1-P | Field mustard | nucleus | 50.85 | 60.0 |
| KRH64668 | Soybean | nucleus | 61.02 | 60.0 |
| KRH53959 | Soybean | nucleus | 60.0 | 60.0 |
| KRH53247 | Soybean | nucleus | 60.68 | 59.87 |
| VIT_07s0031g02610.t01 | Wine grape | nucleus | 59.66 | 59.86 |
| KRH59618 | Soybean | nucleus | 60.34 | 59.73 |
| CDY40894 | Canola | nucleus | 52.54 | 59.62 |
| CDX84443 | Canola | nucleus | 50.85 | 59.52 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 52.54 | 59.16 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 51.86 | 58.85 |
| Bra008309.1-P | Field mustard | cytosol, nucleus, plastid | 51.86 | 58.85 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 52.2 | 58.78 |
| Bra028645.1-P | Field mustard | nucleus | 55.25 | 58.63 |
| Bra029201.1-P | Field mustard | cytosol | 52.54 | 58.49 |
| CDY31350 | Canola | nucleus | 52.54 | 58.49 |
| GSMUA_Achr6P17720_001 | Banana | nucleus | 56.95 | 57.93 |
| CDY21567 | Canola | nucleus | 54.24 | 57.55 |
| AT5G08790.1 | Thale cress | nucleus | 54.92 | 57.24 |
| Solyc04g009440.2.1 | Tomato | nucleus | 58.31 | 57.14 |
| Bra006015.1-P | Field mustard | cytosol, nucleus, plastid | 54.24 | 57.14 |
| CDX81120 | Canola | nucleus | 46.44 | 56.85 |
| CDX69919 | Canola | nucleus | 53.56 | 56.83 |
| Bra009370.1-P | Field mustard | nucleus | 53.56 | 56.83 |
| PGSC0003DMT400082472 | Potato | nucleus | 57.97 | 56.44 |
| CDY39846 | Canola | mitochondrion | 52.2 | 52.38 |
| CDX84050 | Canola | nucleus | 34.24 | 52.33 |
| GSMUA_Achr3P18990_001 | Banana | plastid | 57.29 | 50.75 |
| Zm00001d000112_P001 | Maize | nucleus | 60.0 | 49.3 |
| AT5G63790.2 | Thale cress | cytosol | 53.56 | 49.07 |
| Zm00001d019207_P001 | Maize | nucleus | 43.73 | 43.0 |
| Zm00001d005208_P001 | Maize | nucleus | 43.73 | 42.57 |
| Zm00001d034601_P001 | Maize | nucleus | 44.41 | 41.99 |
| Zm00001d012527_P001 | Maize | cytosol, mitochondrion, nucleus | 42.37 | 40.58 |
| Zm00001d013003_P001 | Maize | nucleus, plastid | 43.73 | 35.15 |
| Zm00001d007850_P001 | Maize | nucleus | 27.12 | 31.87 |
| Zm00001d028999_P001 | Maize | nucleus | 39.32 | 31.1 |
| Zm00001d021818_P002 | Maize | nucleus | 42.03 | 29.59 |
| Zm00001d014843_P001 | Maize | nucleus | 25.76 | 28.36 |
| Zm00001d008399_P001 | Maize | nucleus | 37.29 | 27.64 |
| Zm00001d031164_P001 | Maize | nucleus | 27.46 | 26.47 |
| Zm00001d027530_P001 | Maize | nucleus | 28.47 | 25.85 |
| Zm00001d048347_P001 | Maize | nucleus | 27.46 | 25.55 |
| Zm00001d013151_P001 | Maize | cytosol | 28.81 | 25.3 |
| Zm00001d022424_P001 | Maize | nucleus | 28.14 | 25.15 |
| Zm00001d049687_P001 | Maize | nucleus | 30.51 | 24.46 |
| Zm00001d036364_P001 | Maize | nucleus | 26.78 | 24.23 |
| Zm00001d018773_P001 | Maize | nucleus | 29.15 | 24.02 |
| Zm00001d050410_P001 | Maize | nucleus | 30.51 | 23.62 |
| Zm00001d035076_P001 | Maize | mitochondrion, nucleus | 28.47 | 23.46 |
| Zm00001d023294_P001 | Maize | nucleus | 37.29 | 23.16 |
| Zm00001d034277_P001 | Maize | cytosol, mitochondrion, nucleus | 28.81 | 23.1 |
| Zm00001d032182_P001 | Maize | nucleus | 30.51 | 22.96 |
| Zm00001d042580_P001 | Maize | nucleus | 34.58 | 22.82 |
| Zm00001d038207_P001 | Maize | nucleus | 31.86 | 22.38 |
| Zm00001d010239_P001 | Maize | nucleus | 31.53 | 22.36 |
| Zm00001d020446_P001 | Maize | nucleus | 28.81 | 21.57 |
| Zm00001d018038_P001 | Maize | nucleus | 30.17 | 18.05 |
Protein Annotations
| EntrezGene:101027155 | MapMan:15.5.17 | Gene3D:3.30.310.150 | UniProt:B6SU27 | EMBL:EU956242 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0045893 | GO:GO:0048364 | GO:GO:1900150 |
| GO:GO:1901002 | GO:GO:1902584 | EMBL:HQ858713 | InterPro:IPR003441 | InterPro:IPR036093 | EMBL:KP900766 |
| InterPro:NAC-dom | InterPro:NAC_dom_sf | ProteinID:ONM35851.1 | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31719 |
| PANTHER:PTHR31719:SF43 | SUPFAM:SSF101941 | UniParc:UPI000182BDA2 | EnsemblPlantsGene:Zm00001d042609 | EnsemblPlants:Zm00001d042609_P001 | EnsemblPlants:Zm00001d042609_T001 |
Description
NAC-transcription factor 109NAC domain-containing protein 48%3B NAC transcription factor
Coordinates
chr3:+:173458717..173460818
Molecular Weight (calculated)
32545.8 Da
IEP (calculated)
8.432
GRAVY (calculated)
-0.452
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAGPDLQL PPGFRFHPTD EELVMHYLCR RCAGLPIAVP IIAEIDLYKF DPWQLPRMAL YGEKEWYFFS PRDRKYPNGS RPNRAAGAGY WKATGADKPV
101: GTPKPLAIKK ALVFYAGKAP KGEKTNWIMH EYRLADVDRS ARKKNSLRLD DWVLCRIYNK KGGGLEKAAA PAAGGDHKPV FATAAVSSPP EQKPFVAAAG
201: GLPPAFPELA AYYDRPSDSM PRLHADYSSC SEQVLSPEQL ACDREVQSQP KISEWERTFA SDPVNPAGSM LDPVVGHAGG DPLLQDILMY WGKPF
101: GTPKPLAIKK ALVFYAGKAP KGEKTNWIMH EYRLADVDRS ARKKNSLRLD DWVLCRIYNK KGGGLEKAAA PAAGGDHKPV FATAAVSSPP EQKPFVAAAG
201: GLPPAFPELA AYYDRPSDSM PRLHADYSSC SEQVLSPEQL ACDREVQSQP KISEWERTFA SDPVNPAGSM LDPVVGHAGG DPLLQDILMY WGKPF
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.